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Summary Expression Gene Literature (48) GO Terms (5) Nucleotides (360) Proteins (36) Interactants (47) Wiki
XB-GENEPAGE- 966564

Gene Symbol: ubtf

Gene Name: upstream binding transcription factor, RNA polymerase I

Synonyms: xUBF , ubf , ubf1 , xUBFbeta2 , ubtf-a , ubtf-b
Add Xenopus synonyms , Nomenclature history


Gene Function: high mobility group transcription factor

Protein Function:
UBF recognizes the ribosomal RNA gene promotor and activates transcription mediated by RNA polymerase I through cooperative interactions with the species-specific factor SL1. It binds specifically to t...[+]


Interactants: YYY

OMIM Disease Associations:
 
Xenbase Gene ID XB-GENE-966565 XB-GENE-6254049 XB-GENE-966569
Gene Symbol ubtf ubtf.L ubtf.S
Chromosome scaffold_10 chr9_10L chr9_10S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0
Entrez Gene
Entrez Gene
Entrez Gene
mRNA NCBI Nucleotide Refseq Refseq
Protein NCBI Protein Refseq Swiss-Prot TrEMBL Refseq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v7.1 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.65394 [+] Xl.122 Xl.31219
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 0 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine ubtf ubtf.L ubtf.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards UBTF OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Ubtf MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN ubtf ZFIN Ensembl
chicken
GEISHA UBTF Ensembl
fruit fly
worm
WORMBASE
Publications
First: The Xenopus ribosomal gene enhancers bind an essential polymerase I transcription factor, xUBF. [Genes Dev 1989]
Most recent: Remodeling of ribosomal genes in somatic cells by Xenopus egg extract. [Biochem Biophys Res Commun 2011]
View All Papers
Functional Ontologies tropicalis laevis.L laevis.S
GO 0 term 5 terms 5 terms
EC
PANTHER ubtf
KEGG Pathways K09273 K09273
KOG [R] HMG box-containing protein
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience Source BioScience
Antibody Ubtf Ab1 Ubtf Ab1 Ubtf Ab1
Affymetrix 1.0 StrJgi.2219.1.S1_s_at [+] Xl.122.1.S1_at Xl.4328.1.S1_x_at [+]
Affymetrix 2.0 Xl2.4328.1.S1_at

Symbol legend[+]

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