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Summary Expression Gene Literature (7) GO Terms (23) Nucleotides (245) Proteins (44) Interactants (213) Wiki
XB-GENEPAGE-966777
Gene Symbol:
jmjd6

Gene Name:
jumonji domain containing 6

Synonyms:
psr , ptdsr , ptdsr1 , jmjd6-a , jmjd6-b , jmjd6a ( Add synonyms , Nomenclature history )

Gene Function:
Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain

Protein Function :
Dioxygenase that can both act as a arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as u2af2/...[+]



Interactants:
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Diseases: 


External Links:
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Xenbase Gene ID XB-GENE-966778 XB-GENE-6255376 XB-GENE-6078236
Gene Symbol jmjd6 jmjd6.L jmjd6.S
Chromosome Chr10 chr9_10L chr9_10S
Molecules tropicalis laevis.L laevis.S
Genomic Sequence Version 9.1 Version 9.2 Version 9.2
CDS Gene model Gene model Gene model
Entrez Gene 548957
444377
380206
mRNA RefSeq RefSeq RefSeq
Protein RefSeq RefSeq Swiss-Prot RefSeq Swiss-Prot
Genomic
tropicalis laevis.L laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics tropicalis laevis.L laevis.S
Embryonic Protein Expression Stage profile:
Data Mining tropicalis laevis.L laevis.S
XenMine jmjd6 jmjd6.L jmjd6.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards JMJD6 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Jmjd6 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Jmjd6 Ensembl
zebrafish
ZFIN, AGR jmjd6 ZFIN Ensembl
chicken
GEISHA JMJD6 Ensembl
fruit fly
worm
Publications
First Divalent cation selectivity is a function of gating in native and recombinant cyclic nucleotide-gated ion channels from retinal photoreceptors., J Gen Physiol 1999                          
Most Recent Jmjd6a regulates GSK3β RNA splicing in Xenopus laevis eye development., PLoS One 2019                        
All View All Papers 1 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 3 terms 20 terms 20 terms
PANTHER jmjd6
KEGG Pathways K11323 K11323 K11323
KOG [BT] Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain
Reagents tropicalis laevis.L laevis.S
CRISPRscan Tracks jmjd6
Morpholinos jmjd6 MO1 , Jmjd6 MO1 jmjd6 MO1 , Jmjd6 MO1 jmjd6 MO1 , Jmjd6 MO1
ORFs jmjd6.L ORF1 jmjd6.S ORF1
Clones Horizon Source BioScience Horizon Source BioScience Horizon Source BioScience

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info   [+] Expand list
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