psmd6 Summary [species: Xenopus laevis and Xenopus tropicalis]

Summary

Expression

XB-GENEPAGE-974001

[provisional- machine annotated only]

Gene Symbol: psmd6 [Predicted: Source is Human Entrez Gene]

Gene Name: proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Predicted: Source is Human Entrez Gene]

Synonyms: s10, rpn7, p44s10 Add Xenopus synonyms

Gene Function: 26S proteasome regulatory complex, subunit RPN7/PSMD6

Interactants: hhex(3) , t(3) , a2m(2) , cer1(2) , foxa2(2) , foxi1(2) , kcnma1(2) View All

XB-GENE-974002

XB-GENE-974009

Molecules	tropicalis	laevis
Gene	JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
	Entrez Gene	Entrez Gene
mRNA	Refseq >NM_203933\|Xenopus (Silurana) tropicalis proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 (psmd6), mRNA GCGGTGTCCATCCCTTGCCGGTATTGTTTCTGTGTCTCCGCTGCCTGTGCCGGTGCCAAGATGCCTCTGGAGAACCTGGAGGAGGAGGGGCTGCCCAAGAACCCGGACCTCCGCATCGCGCAGCTCAAGTTCCTGCTGAGTCTCCCCGAGCACCGCCGGGAGGTGCCGCTCCGCTCCGAGCTCATGGAGGCGGTGACTAGTAACAACATGGCTCCTTATTATGAGGGTCTGTGCAAACACCTGGACTGGACAGTGGACATGGACCTGTTGAATAAAATGAAGAAGGCCAACGAGGAGGAGCTGAAGCGGCTGGACGATGAGCTGGAAGATGCAGAGAAGAATCTGGGGGAGAGTGAGATCCGGGACGCTATGATGGCCAGAGCAGAGTATCTGTGTAGGATTGGCGACAAGGAAGGGGCCCTTACTGCCTTTCGGAAGACCTATGACAAGACTGTGGCCCTTGGGCACCGCTTGGATATTGTGTTTTATCTCCTGAGGATCGGCCTCTTCTATATGGACAATGATCTCATTACACGGAACACCGAGAAAGCCAGAAGTCTTATAGAAGAAGGCGGAGACTGGGACCGGCGGAATCGCTTGAAGGTCTATCAGGGCCTGTACTGCGTGGCTATCAGAGACTTCAAGCAAGCAGCCGACCTCTTCCTCGATACGGTCTCCACATTCACCTCCTATGAGCTGATGGACTACAAGACCTTTGTGACATACACGGTGTACGTCAGTATGATAGCACTCGACCGGCCGGACCTGAGAGAGAAGGTTATTAAAGGGGCAGAGATCCTAGAGGTGCTGCACAGCTTACCCACAGTCCGGCAGTATCTGTTCTCACTGTACGAGTGTCGCTATGGTGTCTTCTTCCAGTCCCTGGCTGCCGTGGAACAGGAGCTTAAGAAGGACTGGCTCTTTGCCTCCCACTACCGTTACTACGTGAGAGAAATGCGGATCCAGGCCTACGGTCAGCTTCTGGAGTCCTACCGCTCGCTAACCCTCGGCTACATGGCCGAGGCATTTGGTGTTGGAGTGGAGTTCATAGACCAGGAGCTCTCCAGGTTTATAGCGGCGGGACGGTTACACTGCAAGATAGACAAAGTCAACGAGATTGTAGAGACCAACAGACCCGACAGCAAGAACTGGCAGTACCAAGAGACGATAAAGAAGGGCGACCTGTTACTGAATAGAGTACAAAAGCTCTCCCGGGTCATCAACATGTAGCACCTCAGGCAGCGCTTTTGTTTTCTTTTTATTATTGCGGGAGAATGGATTGAGGTGTAGAAACCTTACTGAGCTGTGTATAATATCCTGTCTTATTACTCAGTGTTTTGTGAGATGTGCGAAGGCATGTAGTTAGGGGTTTTTACAGTTTTACAGAATGTAAACAATCCAACGATTGCAAAAAGAAGAAAAAAAAAAATAAACAAAAAAAAAAAGGAAAAATATATATATAAATAAAAACAAAAAATAAATCTATTCGCTTTCCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001094843\|Xenopus laevis hypothetical LOC495148 (LOC495148), mRNA CGAGCCGGTATTCTTTCTCTGTCTCCGCTGCTGCTGCCGCTGTCGGTGCCGAGATGCCGCTGGAGAACCTGGATGAGGAGGGGCTGCCCAAGAATCCGGATCTCCGCATCGCGCAGCTCAAGTTCCTGCTGAGTCTCCCCGAGCACCGCCGGGATGTGCCGCTCCGCACTGAACTCATGGAGGCGGTGACTGTGAATAATATGGCTCCGTATTACGAGGGTCTGTGCAAACATCTGGACTGGACGGTGGACACGGAGCTGCTGAATAAAATGAAGAAAGCCAACGAGGAGGAGCTGAAGAGGCTGGACGATCAGCTGGAAGATGCAGAGAAGAATTTGGGGGAGAGCGAAATCCGGGACGCAATGATGGCCAGAGCCGAGTATTTGTGCAGAATCGGCAACAAGGATGGGGCCCTCACTGCCTTTCGGAAGACTTATGATAAGACTGTGGCCCTTGGGCACCGCTTGGATATTGTGTTTTACCTCCTGAGGATCGGCCTGTTCTATATGGACAACGATCTCATCACCCGAAACACAGAGAAAGCCAGAAGTCTCATAGAGGAAGGCGGAGACTGGGACCGGCGGAATCGTTTGAAGGTGTATCAGGGCCTGTACTGTGTGGCCATCAGAGACTTCAAGCAAGCGGCCGACCTCTTCCTGGACACCGTCTCCACATTCACATCGTATGAACTGATGGACTACAAAACCTTCGTCACTTACACCGTGTATGTCAGTATGATTGCCCTCGACCGGCCAGACCTCAGAGAGAAGGTTATTAAAGGAGCAGAGATCCTAGAGGTGCTACACAGTTTGCCCACAGTCCGGCAGTATCTGTTCTCACTGTACGAGTGTCGCTACTCCGTCTTCTTCCAGTCCCTGGCTGCTGTGGAACAGGAACTGAAGAAGGACTGGCTGTTTGCCTCTCACTATCGCTACTACGTGAGGGAGATGCGGATCCAGGCGTACGGTCAGCTGCTCGAGTCCTACCGCTCACTAACACTGGGGCACATGGCCGAGGCTTTTGGTGTCGGAGTGGAGTTCATAGACCAGGAACTCTCCAGGTTTATAGCGGCGGGACGGTTACACTGCAAGATCGACAAAGTCAACGAGATCGTAGAGACCAACCGACCCGACAGCAAGAACTGGCAGTACCAAGAGACGATAAAGAAGGGCGACCTGTTACTGAACCGAGTACAGAAGCTCTCCCGGGTCATCAACATGTAGCTCCTCGCGGCGTCGCTTCGATTTCCTTTTTTTATTATTGCGGGAGAATTGGATTAAGGTGTAGAAACCCGACTGGAGCCGTGTATAATATCCCGTCTTATTACTCCCTGTTGTGTGACGTGTACCAAGGCCTGTAGTTAGGGGGTTTTTACGGTTTTACAGAACGTAAACAATCCAGCGATTGCTAAAAGAAGACAAAAAATAAAAAAAACAGTAAAAAAAAAGGAAAACTATATCTATAAATAAAAAACAAAAAATAAATCTATTCTCTTTTCCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein	Refseq >NP_989264\|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Xenopus (Silurana) tropicalis] MPLENLEEEGLPKNPDLRIAQLKFLLSLPEHRREVPLRSELMEAVTSNNMAPYYEGLCKHLDWTVDMDLLNKMKKANEEELKRLDDELEDAEKNLGESEIRDAMMARAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKARSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAADLFLDTVSTFTSYELMDYKTFVTYTVYVSMIALDRPDLREKVIKGAEILEVLHSLPTVRQYLFSLYECRYGVFFQSLAAVEQELKKDWLFASHYRYYVREMRIQAYGQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM	Refseq >NP_001088312\|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 [Xenopus laevis] MPLENLDEEGLPKNPDLRIAQLKFLLSLPEHRRDVPLRTELMEAVTVNNMAPYYEGLCKHLDWTVDTELLNKMKKANEEELKRLDDQLEDAEKNLGESEIRDAMMARAEYLCRIGNKDGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKARSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAADLFLDTVSTFTSYELMDYKTFVTYTVYVSMIALDRPDLREKVIKGAEILEVLHSLPTVRQYLFSLYECRYSVFFQSLAAVEQELKKDWLFASHYRYYVREMRIQAYGQLLESYRSLTLGHMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM

Genomic	tropicalis
Genome Browser	Xenbase	Xenbase JGI Ensembl UCSC	Xenbase

Synteny	Metazome

Expression	tropicalis	laevis
UniGene	Str.17161 [+] Str.30351 Str.47371 Str.54708	Xl.29357 [+] Xl.8757 Xl.62445
Unigene EST Profile	EST Profile	EST Profile
GEO data		GEO
Images	0 expression image(s) for tropicalis and laevis

Orthology	MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		PSMD6
mouse	MGI	Psmd6	All(2) Targeted, other(1)
zebrafish	ZFIN	psmd6	2 Lines(s)

Publications
First:		Movements of supernumerary hindlimbs after innervation by single lumbar spinal nerves of Xenopus laevis. [Experientia 1979]
Most recent:		Tcf21 regulates the specification and maturation of proepicardial cells. [Development 2013]
		View All Papers 5 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		proteasome endopeptidase activity threonine endopeptidase activity
Biological:
Cellular Component:
EC:		proteasome endopeptidase complex
KOG:		[O] 26S proteasome regulatory complex, subunit RPN7/PSMD6

Reagents	tropicalis	laevis
Clones	open biosystems	open biosystems
	geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0	Str.17161.1.S1_at [+] Str.30351.1.S1_at Str.47371.1.A1_at	Xl.8757.2.A1_at [+] Xl.22611.1.A1_at
Affymetrix 2.0		Xl2.29357.1.S1_at [+] Xl2.22611.2.S1_at Xl2.22611.1.A1_at

Symbol legend[+]