bard1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (3)

Interactants (5)

XB-GENEPAGE-492034

Gene Symbol: bard1 Gene Name: BRCA1 associated RING domain 1 Add Xenopus synonyms Gene Function: transcriptional regulator Interactants: brca1(3) , ran(2) , hmmr(1) , numa1(1) , tpx2(1) , View All

XB-GENE-492035

XB-GENE-492039

Molecules		tropicalis	laevis
Gene		JGI XT Genome 4.1 Ensembl
			Entrez Gene
mRNA		JGI mRNA >e_gw1.15.285.1 ATGCTGCTAAGGGTGCGCTCTGGGAACCGGCCTCAGGAAACAACGAGGGAAGGAGCTCCTCTGATGGATGCGCCGGGCTGGGACCGGACACGGGACGCACTTGGGGAGCTGGAGAGAAATTTGTGCTGCTCCAAATGTATGTCTATACTAAAGGATCCTGTGTGTTTGGGTGGATGTGAACATGTGTTTTGTTGGACATGTGTGAATGAGAATATTGGGAATGAGTGTCCACTGTGCAACACACCTGCATGGGCGTGCGATGTACAAATAAACAGACAACTGGACAACATGATACAGCTATGTGCTGATCTGAGAAACCTGTTGAGTAAGGGCAAAACAGATGAAAACAAAATGGATTTATGTCAGGATATGTTGCACAGACTAAACCCTGCTAACGAAAAGCACAAGAAAAAACAAATAAAGATGTGGTTTAGCCCACGGACCAGGAAGGTGAGATGCGTCATGGAAAAAACAGAAAGGAGCCAACAGTTTTCATCAAAAACTTGTCCACAAATGACCTCATACGAGTATGTTTCAGATTCTCCTGATAGTGAGCCTGTGAAAAAGAAACGTGATCCAAAACCTAGAAAAAATAAAAAATTGAAAGATATTAACAGAGAATGGGGTATTGATACAGGGAATGAAATAGATGAGCTATCTAATCCAAGCAAGGAACACAAGTCGGGTAAATCTGTTTCGTTTTGTGGCTCCATGATCATGCAGCATAGTCCAGAGGTGGTTGTACAAAGCAGCTTGAAGAATGACACACTGGAAGAAATAAACCCTCCTAAGAATCAGTGTGGCCTGGATGAACCTGTGGAAATGCAATCAAACAGTTTGAAAGAAGTGAACTGCCCCAGTCCCAGTGCCACATTTAAAAACCAAAACAAAGAGGAAAAAACAAATCCTGTGAAACGCAAAAAAAACTTAACTCCTATATCCTCTGCCTCAAAGCGCCTAAGAAGAAGGTCAAGCGATATCTTAAATGAGAGAAGTTTAAAAGCAAACTCACCTGATAAAGGAACTAAAACAGCGTCTCGGCATAAATCTGCTGAAAACACAGAAAGCACGGAGACGGCACAATGTGATGCTAAAATGTGTTCCACTCCTCCACCCCACGCGAAGCAGAAGAATGGTGGCAAATCAGGGCAAAAAATTACAACTGTGCAGATCTCGCCGAATAATTTGACAAATGTAAAAAGAAACCACAAAGGAGAGACAATGTTGCATTTGGCATCAATTAAGGGTGATATTCAAGGAGTGGAGGACCTTCTTAAGAGTGGGGCAAATCCTAATGTGAAGGACAATGCTGGTTGGACCCCACTGCATGAAGCTTGCAATCTTGGACACACGGTGATTGTTGAGCTGCTGCTTCAGCACCATGCGCTAGTGAACACTACAGGTTACCAGAATGATACACCACTTCATGATGCCGTTAAAAATGGCCACATTGCCATTGTCCAGCTGCTATTGTCTCATGGAGCTTCCCAGGAGGCAGTTAATATATTCGGTCTGCAGCCTGTAGACTATGCAGAAACCGAGAAGATGAAGTCGGTACTGCTGGAAACCCAGACAACGAGAAATCGACTTTTCTCGCACCAGCGGAAAGAAGAAACGGTTGTACTAATAGCCAGTGGGCTGCTGGCTACTCAGCGTGCCGATCTGACCAAGCTTGCAAAAACGCTGAAAGCTGAAGTTTGTGCTGAATATGATGGCAAAGTTACACATGTTATTGTAAGTGATGAGCCTCTGCTACGAACCATGAAATGCATGATGGGTATATTAGCTGGATGCTGGACGCTTCGATTTGCTTGGGTAAAAGCCTGCCTGGAATCATGTGATCGAGAACCAGAAGAACCATATGAGATTCATAGTGGACCACACCGAGCACGCCTAAACAAACAGCAGCTGCTGCCCCAGCTGTTGGACGGATGCCATTTCTATTTTCTTGGCTGTTTTAAAGAACACCGTAAAGAAGACCTTGTTGAACTGGTTAAAGCCGCTGGTGGACAAATCCTTATTCGTCAGCCTAAACCTGATAGTGATGTAACACAAACCATCAACACTGTGGCGTACCATGCAGAAGCCGATTCTGATCAGCGGTTCTGCACGCAATATATTGTGTATGACAGAACTTCCAAGTACCGCCCTGAGAGAGTGCGCCAGGGGAAAGTTTGGTTTGCCCCCTCCAGTTGGATAATAGAATGCATCACCAGCTTCCAGCTCTTACCTGTGCCCCAGTCTTGTTGA	Refseq >NM_001088662\|Xenopus laevis BRCA1-associated RING domain protein (bard1), mRNA CGGCGATCTGTTCGGAACGTCTAATCAACGGGAGTGGGCTCCCCTCATTATGCTGCTAAGGGTGCGCTCCGGGAACCGGCCTTCTGAAACGGCAGTTAGGGAAGAACTACCTATGATGGATGAGCCGGGCTGGGAGCGGACACGGGACGCGCTTCGGGAAATGGAGAGAAAGTTGTGCTGCTCCAAATGCATGTTTATACTGAAGGATCCTGTGTGTTTGGGTGGATGCGAACATGTATTTTGTTGGACATGTGTTAATGAAAACCTTGGCAATGAATGCCCACTGTGTAACACACCTGCGTGGGTGCGTGATGTACAAGTAAACCGACAACTAGACAACATGATACAGCTGTGTGCTAAACTGCGAAACTTGTTGAGCATGGGAAAAACAGACGAAAACAAAATGGATTTATGTCAGGATACATTGCTCAGACTAAATCCTGCTCAAGAAAAACAGAAGAAAAAACAAATAAAGATGTGGTTTAGCCCCCGATCCAGGAAGGTGAGATGTGTAGTGGAAAAAAAAGAGAAGAGCCAACAAATTTCATCAAAAACTCTTCCACAAATGGCATCGTACGAGTTTGTTTCGGATTCTCCTGATGGTGAGCCTGCGCAAAAGAAACCTGATCCGAAACCTAGGAAAAGGATGAAAAAAAAGTTGAAAGATATTAATGCAGAATGGGGTGTTGATACAGAGAATGAAATAGATGAGGTATCTAATCCAAGAAAAGAACACAAGTCGGGTAAATCTGTTTCGTTTTGTAGCTCTGCCGTCATTCAACATAGTCCGGAGGTGCTGGTGGTAGAAAGCAGCTTGAAGAATGACACACCAGAAGAAATAAGCCCTAATTGGAACAAGTGTGGCCTGGATGAACCTATGGAAATGCAATCAACCAGTATGAAAGAAGTGAACTGCCCCAGTCCAAGTGAACAAAGCACCACGTTGAAAACCCAAGACAAAGAGAAAAAAATAACTACCGTGAAACGGAAAAAACACTCATCCCCTATAGCTTCTTCAAAGCGGCCAAGGAGAAGGTCTAGTGATACCTCAAAGCCTTTGAATGACAGCGACATAAAGGCAAACTCACCTGAAAAAGCCTGTAAAACAGTGTCTCCACATAAACCTTCTGAAAATTCTGCAAAAGATGTTCGAATAGAAAGCACGCAGGCCGCAAAACGGGATACTAAAATGTGCTCCACGCCTTTACCCTGTGCAAAACAGAACAATAGTGCCAAATTGGGGCAAAAAAGTACAGCAATGCCGATATCGCCAAATAATTTGACAAATGTCAAAAGAAATTACAAAGGAGAGACCATGTTGCATTTAGCATCAATTAAGGGTGATATTCAAGGAGTGGAGGACCTTCTTAATAGTGGGGCAAATCCTAATGTGAAGGACAATGCTGGCTGGACTCCTCTGCATGAAGCTTGCAATCTTGGACACACAATGGTTGTTCAGTTGCTCCTTCAGCACCATGCCCTAATGAACACTACAGGTTACCAGAATGATACACCACTTCATGATGCTGTGAAAAATGGCCACATAGCCATTGTCAAGCTACTTCTGTCTCATGGAGCTTCCCGGGATGCAGTTAATATATTCGGTCTGCAGCCTGTAGACTATGCAGAAACAGAGGAGATGAAGTCGGTATTGCTGGAAACCCAGACAGAGAGAGATCGACTTTTGTTGCATCCATGCCTTGCAGCTCCACAGCTGAGCTCACACCAGCGGAAAGAAGAAGCGGTTGTGCTAATAGCCAGTGGGCTGCTGGCCACTCAGCGTGCCGATCTGACCAAGCTTGCGAAAATGCTGAAAGCTAGTATTTGTGCTGAATATGACAGCACAGTTACACATGTGATTGTGAGCGATGAGCCTGTGCTTCGAACCATGAAATGCATGATGGGTATATTAGCTGGATGCTGGACGCTTCAATTTTCTTGGGTAAAAGCCTGCTTGCAATCATGTAATCGAGAACCAGAAGAGTCATATGAGATTCCTCATGGACCACACAGAGCACGACTAAACGGACAACAGATGCTGCCCCAGCTGTTGGATGGATGCCATTTCTACTTTCTTGGCTGTTTTACAGAGCATCGCAAAGAAGACCTCATTGAACTTGTTAAAGCTGCTGGTGGGCAAATCCTTATTCGTCAGCCTAAACCTGATAGTGATGTAACACAAACCATTAACACGGTGGCATACCATGCAGAAGCAGATTCTGATCAACGGTTCTGCACACAATATATTGTGTTTGACAGAGCTTCCAAGTACCGTCCTGAGAGAGTGCGCCAGGGGAAAGTTTGGTTTGCCCCTTCCAGTTGGATAATTGAATGCATCACCAGCTTTCAACTGTTACCTGTGCACTAGTGATGCTGAGCAAAATTCAATCAATGTATTTGCCATCAATGGATTGGAAAAATTGTCAATGCTCACATACAGTATCTACCTGTCAAATTTTAGATCTTAAATCTATTTCGGACTGTCGGAAAAACACAGAAAATAAAAAAAAAAAAAAAAAA
Protein		JGI protein >e_gw1.15.285.1 MLLRVRSGNRPQETTREGAPLMDAPGWDRTRDALGELERNLCCSKCMSILKDPVCLGGCEHVFCWTCVNENIGNECPLCNTPAWACDVQINRQLDNMIQLCADLRNLLSKGKTDENKMDLCQDMLHRLNPANEKHKKKQIKMWFSPRTRKVRCVMEKTERSQQFSSKTCPQMTSYEYVSDSPDSEPVKKKRDPKPRKNKKLKDINREWGIDTGNEIDELSNPSKEHKSGKSVSFCGSMIMQHSPEVVVQSSLKNDTLEEINPPKNQCGLDEPVEMQSNSLKEVNCPSPSATFKNQNKEEKTNPVKRKKNLTPISSASKRLRRRSSDILNERSLKANSPDKGTKTASRHKSAENTESTETAQCDAKMCSTPPPHAKQKNGGKSGQKITTVQISPNNLTNVKRNHKGETMLHLASIKGDIQGVEDLLKSGANPNVKDNAGWTPLHEACNLGHTVIVELLLQHHALVNTTGYQNDTPLHDAVKNGHIAIVQLLLSHGASQEAVNIFGLQPVDYAETEKMKSVLLETQTTRNRLFSHQRKEETVVLIASGLLATQRADLTKLAKTLKAEVCAEYDGKVTHVIVSDEPLLRTMKCMMGILAGCWTLRFAWVKACLESCDREPEEPYEIHSGPHRARLNKQQLLPQLLDGCHFYFLGCFKEHRKEDLVELVKAAGGQILIRQPKPDSDVTQTINTVAYHAEADSDQRFCTQYIVYDRTSKYRPERVRQGKVWFAPSSWIIECITSFQLLPVPQSC*	Refseq >NP_001082131\|BRCA1 associated RING domain 1 [Xenopus laevis] MLLRVRSGNRPSETAVREELPMMDEPGWERTRDALREMERKLCCSKCMFILKDPVCLGGCEHVFCWTCVNENLGNECPLCNTPAWVRDVQVNRQLDNMIQLCAKLRNLLSMGKTDENKMDLCQDTLLRLNPAQEKQKKKQIKMWFSPRSRKVRCVVEKKEKSQQISSKTLPQMASYEFVSDSPDGEPAQKKPDPKPRKRMKKKLKDINAEWGVDTENEIDEVSNPRKEHKSGKSVSFCSSAVIQHSPEVLVVESSLKNDTPEEISPNWNKCGLDEPMEMQSTSMKEVNCPSPSEQSTTLKTQDKEKKITTVKRKKHSSPIASSKRPRRRSSDTSKPLNDSDIKANSPEKACKTVSPHKPSENSAKDVRIESTQAAKRDTKMCSTPLPCAKQNNSAKLGQKSTAMPISPNNLTNVKRNYKGETMLHLASIKGDIQGVEDLLNSGANPNVKDNAGWTPLHEACNLGHTMVVQLLLQHHALMNTTGYQNDTPLHDAVKNGHIAIVKLLLSHGASRDAVNIFGLQPVDYAETEEMKSVLLETQTERDRLLLHPCLAAPQLSSHQRKEEAVVLIASGLLATQRADLTKLAKMLKASICAEYDSTVTHVIVSDEPVLRTMKCMMGILAGCWTLQFSWVKACLQSCNREPEESYEIPHGPHRARLNGQQMLPQLLDGCHFYFLGCFTEHRKEDLIELVKAAGGQILIRQPKPDSDVTQTINTVAYHAEADSDQRFCTQYIVFDRASKYRPERVRQGKVWFAPSSWIIECITSFQLLPVH

Genomic

tropicalis

Genome Browser

Synteny

Xenbase G-Browse

GBrowse

Expression		tropicalis	laevis
UniGene			Xl.12056
Gurdon EST/FL		XZG35013	IMAGE:6318030
Affymetrix 1.0			Xl.12056.1.S1_at
GEO data			GEO

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene	BARD1	OMIM:114480
mouse		MGI	Bard1	All(2) Targeted, other(2)
zebrafish

Publications
First:		Functional communication between endogenous BRCA1 and its partner, BARD1, during Xenopus laevis development. [Proc Natl Acad Sci U S A 2001]
Most recent:		A mitotic role for BRCA1/BARD1 in tumor suppression? [Cell 2006]
		View All Papers

Functional Ontologies
GO: Molecular:		ubiquitin-protein ligase activity zinc ion binding
Biological:		protein ubiquitination
Cellular Component:		intracellular ubiquitin ligase complex
EC:
KOG:		[K] Myotrophin and similar proteins

Suppliers		tropicalis	laevis
Clones			open biosystems
		geneservice	geneservice
		RZPD imagenes	RZPD imagenes

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