sod2 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (2)

Nucleotides (153)

Interactants (0)

XB-GENEPAGE-1000988

[provisional- machine annotated only] Gene Symbol: sod2 [Predicted: Source is Human Entrez Gene] Gene Name: superoxide dismutase 2, mitochondrial [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: Manganese superoxide dismutase Interactants:

XB-GENE-1000989

XB-GENE-1000995

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001005694\|Xenopus (Silurana) tropicalis superoxide dismutase 2, mitochondrial (sod2), nuclear gene encoding mitochondrial protein, mRNA GCAGACTCCTTTTCGTTGTCGAACTTGCACTTGACCGCAGACATGCTGTGCAGGCTCAGTGTTTGTGGCAGGGGAAGGCTTAGATGTGCTCCAGCCTTGACATACTTTACGTCCAGGGAAAAGCATACTCTGCCTGACTTACCATATGATTATGGTGCTCTGCAGCCCCACATCAGTGCTGAAATCATGCAACTACACCACAGTAAACACCATGCTACTTATGTGAACAACCTTAATATTACAGAAGAAAAATATGCAGAGGCCCTGGCTAAAGGGGATGTTACAACTCAAGTCTCTCTTCAAGCTGCACTTAAATTTAATGGTGGTGGCCATATCAATCACACAATCTTCTGGACAAACCTTTCCCCTAATGGTGGAGGGGAACCACAAGGAGAACTTCTAGATGCCATAAAGAGAGACTTTGGCTCCTTTGAGAAATTTAAGGAGAAATTAAGTACTGTGTCAGTTGGAGTCCAGGGATCAGGGTGGGGATGGTTGGGTTATAACAAGGAATCTAATAGACTTCAACTGGCTGCCTGTGCCAATCAAGACCCTCTACAAGGAACAACAGGTCTTATACCTCTGCTTGGAATTGATGTGTGGGAGCATGCTTATTACTTGCAATATAAAAACGTTAGACCAGACTATATGAAAGCGATCTGGAATGTTATCAACTGGGAGAATGTAGCCGAAAGATACCGGGCTTCCAAAAAATAAAGTGCTAGATCTGTTCTCTGTTCTGTCCGTTACAGCCAGTGTAACACATCTATACAGCATCTATAGTTAAAGATTATCTGTCTGTTTTCAAAGAGAATTGTTGCTTCTCACACATCCCTCAGACTGAATGCACTTACTAGACTTACAGGCCACGTCCAATCTGTGAGCACTTAGAAGCCTGTAGAATCAATCCTTTTCATAGCTTGAGCTTTACTGGTGGTCTGTTGTGAAAATAACATTTTGCAATTCAATAATAAAGGCAGCAGCAATGTTAATTTTTTTCTTGCATACTTTTCTATATGTGTAGATTTCTTTAATAACTATAAATTGTTGAACAATGTGCCGATTCCTTAGTAAATTGGTTTTTTTTGTAATATAAATTATATTTTTGACAAGTACAGCATGAAAATTCACTTAATCAATGTCATCATGTGACATTAGATTTTTAACTGGCAGAAAGCTAGAGCTATGGTTCTCAACTGCTTTTCTCCAAGGCCTCATATGCCTATTATAAAACACCTATTTGAACCAAAACTACTAAAATTACAGTCACAATAAAAGTGTTAGCAAAACTCACCATTAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001090499\|Xenopus laevis superoxide dismutase 2, mitochondrial (sod2), nuclear gene encoding mitochondrial protein, mRNA GGGGAGCAGAAGGTGCAAGGGCAGAGAGTTCTACTGACAGAGCTGACACACTGCAGACAACTCTCTCCTTTGCCTTGTGTAGGACTCGCGCTCCAGTGCAGACATGCTGTGCAGGCTCAGTGTTTGTGGCAGGGGAAGGATGAGATGCGTTCCAGCCTTGGCCTACTCTTTCTGCAAGGAGAAGCATACTCTGCCTGACTTGCCTTATGATTATGGTGCTCTGCAGCCCCACATCAGTGCTGAAATTATGCAGCTACACCACAGTAAACACCATGCTACCTATGTAAACAACCTAAATATTACTGAGGAAAAATATGCAGAGGCCCTGGCTAAAGGGGATGTTACAACTCAAGTCTCTCTTCAAGCTGCACTTAAATTTAATGGTGGTGGCCATATCAATCACACAATCTTCTGGACAAACCTTTCCCCTAATGGTGGAGGGGAGCCACAAGGAGAACTTCTAGATGCCATAAAGCGAGACTTTGGCTCCTTTGAGAAGTTTAAGGAAAAATTAAATACGGTGTCAGTTGGAGTCCAGGGATCAGGGTGGGGATGGCTGGGTTATAACAAGGACTCTAATAGACTTCAGCTGGCTGCCTGTGCCAATCAAGACCCTCTACAAGGAACAACAGGTCTTATCCCTCTGCTTGGAATCGATGTGTGGGAGCATGCTTATTACTTGCAATATAAAAATGTCAGACCAGACTATTTGAAAGCGATCTGGAATGTTATCAACTGGGAGAATGTCACCGAAAGATATCAGGCTTCCAAAAAATAAAGTGCTGGGTCTGTTCTGTTCATTACAGCCAATTTAACACATCTTTAGTTAAAATTTTCTCTGTCTGTTTCTCAAAGAAAATAGCTGCTTCTCTCATTATAATGTCCTCAAACTGAATGCATTTATTAGATTTACAGGCCATTTGTTCAACTCTCAGAGCACATAGACGCCTGTATAATCACCCCTTTTTATAGCCACAGTTGTGTTGATGTTCTGTTGTGTAAATTACATTTGCAATTCAATAATAAAGGCAGCAGCAATGTTAAAAAAAAA
Protein		Refseq >NP_001005694\|superoxide dismutase 2, mitochondrial [Xenopus (Silurana) tropicalis] MLCRLSVCGRGRLRCAPALTYFTSREKHTLPDLPYDYGALQPHISAEIMQLHHSKHHATYVNNLNITEEKYAEALAKGDVTTQVSLQAALKFNGGGHINHTIFWTNLSPNGGGEPQGELLDAIKRDFGSFEKFKEKLSTVSVGVQGSGWGWLGYNKESNRLQLAACANQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYMKAIWNVINWENVAERYRASKK	Refseq >NP_001083968\|superoxide dismutase 2, mitochondrial [Xenopus laevis] MLCRLSVCGRGRMRCVPALAYSFCKEKHTLPDLPYDYGALQPHISAEIMQLHHSKHHATYVNNLNITEEKYAEALAKGDVTTQVSLQAALKFNGGGHINHTIFWTNLSPNGGGEPQGELLDAIKRDFGSFEKFKEKLNTVSVGVQGSGWGWLGYNKDSNRLQLAACANQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYQASKK

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.15249	Xl.23883
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SOD2
mouse		MGI	Sod2	All(6) Targeted, knock Out(3) Targeted, other(2)
zebrafish		ZFIN	sod2

Publications
First:		AntiClustal: Multiple Sequence Alignment by antipole clustering and linear approximate 1-median computation. [Proc IEEE Comput Soc Bioinform Conf 2003]
Most recent:		In vitro and in silico cloning of Xenopus laevis SOD2 cDNA and its phylogenetic analysis. [DNA Cell Biol 2005]
		View All Papers

Functional Ontologies
GO: Molecular:		copper, zinc superoxide dismutase activity iron superoxide dismutase activity manganese superoxide dismutase activity More[+] metal ion binding nickel superoxide dismutase activity superoxide dismutase activity
Biological:		superoxide metabolic process
Cellular Component:
EC:		superoxide dismutase
KOG:		[P] Manganese superoxide dismutase

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.15249.1.S1_at	Xl.23883.2.S1_x_at [+] Xl.23883.2.S1_a_at Xl.23883.1.S1_at
Affymetrix 2.0			Xl2.23883.1.S1_at

Symbol legend[+]