idh1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (1)

Nucleotides (331)

Interactants (15)

XB-GENEPAGE-1004993

[provisional- machine annotated only] Gene Symbol: idh1 [Predicted: Source is Human Entrez Gene] Gene Name: isocitrate dehydrogenase 1 (NADP+), soluble [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: NADP-dependent isocitrate dehydrogenase Interactants: celsr1(1) , cyp26a1(1) , g6pd(1) , idh2(1) , lep(1) , me2(1) , me3(1) View All

XB-GENE-1004994

XB-GENE-6255336

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001004863\|Xenopus (Silurana) tropicalis isocitrate dehydrogenase 1 (NADP+), soluble (idh1), mRNA GGCGCGGTGAGAGGCTGGCGCTGGGTAGTGTCTGTAGCTAAAGCTCTTGCTGCCCCTCGGAAGACCTTAGAGTGATTTTGCAGATTCTGCTTGTTGTTTGCCTCTTAAAAACGCCAGGATGTCCAAGAAAATTAATGGTGGTTCTGTGGTAGAAATGCAAGGAGATGAGATGACAAGAGTTATATGGGACCTGATTAAAGAGAAGCTAATTTTGCCCTACGTAGAGTTGGATTTACACTGCTATGATCTGGGCATAGAAAACCGTGATGCCACTGATGATCAAGTCACAGTGGATGCTGCAGAAGCTATTAAAAAGTACAACGTTGGCATCAAATGTGCCACTATTACACCTGATGAGAAGAGGGTAGAAGAATTCAATTTGAAACAAATGTGGAAATCTCCAAATGGAACTATCAGAAATATTCTTGGAGGCACAGTGTTTAGAGAGGCCATCATCTGCAAAAACATCCCAAGACTTGTTTCAGGATGGGTCAAACCTATTATCATTGGTCGTCATGCATATGGTGACCAGTATAGAGCAACTGACTTTGTGGTGCCTGGGCCAGGTAAAGTGGAAATATCATTCACACCTAAGGATGGAGGGGAGGCCATCAAGTATGTTATCCATAATTTTGAAGACTGTGGAGGGGTTGCGCTCGGAATGTACAACACAGATCAATCCATTAGAGACTTTGCACACAGTTCTTTCCAGATGGCTTTGTCTAAAAGCTGGCCCCTGTATATGAGTACCAAAAACACCATTCTCAAGAAATATGATGGGCGATTCAAAGATATATTCCAGGAAATATATGAGAAGGATTACAAGTCCCAGTTTGAAGAAAAAAAAATCTGGTACGAACACAGGCTTATTGATGATATGGTAGCACAAGCAATGAAATCTGAAGGAGGCTTCATCTGGGCTTGCAAAAACTATGACGGGGATGTGCAATCCGATTCTGTTGCTCAAGGTTAGAAACAAATGTCCACCTTTAAAACTGCAATACACGCCTATGTTGAAAACGTATTCTCTATATTCCAGATCTAGACCATGTAGTTTTTGTACCTAAGGCAATGTGCCTATAATATTTGGCACAATGCCCTATAAAGCCCAAACAGCAAGTTCCCCTTTTTCTTCCTTTTTTGTTGTGCTTAGCACACAGAGGGAGCCCATGCTTTTAGGTTGAGAGCTGAGCGCAGACTCTTTAAAGAAAGACCTGTGTCACACTGGGATGCACATAACTAGGTTAGGAACAGGTAGCTAATTTAAGGTACTCTTTTTTATATTTATGGGTATAAATATTAAATGTATTTAAAAATAATGCATCCGAACAAGTTAATCCTAATTTATTTATAGGCTGTGTGGATGATAGTTCCATAGACCCATACCCTATTAGAATGCTAATAATTTACTAACATGTAAGCTGTACAGATGCTCAAAGGAAGCATATTCTACCCTTTTTCTGAAAAAAAGGAGAGATGAAAAAAGTTATGGTTGATATAATTTAACTGAACAGAAAATTCACAAAATTTGGCTTGTCCTCCTAACTTTGAATTTCTGTCTTGTTTTATATTTGATGATGCAATGCATGTCAGTTTATTCACAACCTTATATATCTTTTGTAAGGATATGGCTCTCTTGGCATGATGACAAGTGTGTTGATATGTCCTGATGGGAAGACAGTGGAGGCAGAAGCAGCCCATGGGACAGTAACCCGGCATTATAGAATGCATCAAAAAGGACAAGAAACATCAACCAACCCCATTGCTTCTATCTTTGCCTGGACAAGAGGCCTGGATCATAGAGCAAAACTGGATAATAACCAAGAACTTAAGAACTTTGCAACAACCTTAGAGGAAGTCTGTGTTGAAACCATTGAGGCTGGATTTATGACTAAGGACCTTGCTGCTTGTATTAAAGGTTTACCAAATGTGCAGCGAGCTGACTACTTGAGCACCTTTGAATTTATGGACAAACTAGCTGAAAATCTGCAGCTGAAACTTGCTGCTCACCCTAAGCTGTAACAGAGATCTTACTGGGAGAACTTAGCTGTCATACACTGCACTTGGTTTACAACTTCTCAAAACGAAGTTAAATGTCCGTCCCTAGTTAGTGCATAGGTGAACAAACTTGAACTTTACATTTATTTGCAGTAATTTAATTGTAACAGAAGGTTCTAATTTACATATTATGTTTTGTTGGTAATTCAGAACCATAAATAAATGAACTTCTCATTATACTTAAGGGGACCACTGCACCCTCAACTTAATATATCAGCATAAATCAGGGAAAACAGTCTTATTCCTAAAATATTTTATACTGTGCCTTCAAGTAAGAAAATGCTTTGCTACATGTGGATTAACATAAATGGTTATCTGGTGCATAGCTCATATGTGATTAAGACCTGGAAAAAAATTGTACAGGTAAATACAAACCATTACACTTGTGAAGATTTGGATTCATTTATTTTGTACAGCGTACAAAAAACACTGATCAGAATGTGCTAGTATAAATGTTTTCATTACTGGCAAATGTTGTATTCATTTACTTGAAACTGCAAGGCAGTTCACTACAACAGAGATAAGACTGAATGTTGGTTCCACTAGTGTATTGCTCTGGGGGATCCCCTGCATATCGCACATGAAACTGGCTCTGTATGTAGCCAGAGTTCTTTACAAAATGTTAGTGTAATTCAATGCAATTTGTTGACCAGGCAATGAGGAGTGTACTAAGGAGGGGGAAAATGCTTCTAATCACCCTAATTTACTTGTATGGTAATCCCCTGCAAGTGTCATATGTCCATCTCAGGCGAATGTTGCATATTACCGCTGACTGTCGTGTTTCTGAGCAAGAACTTCCTTGGGCAGGCAATTGCTATTCAAGTAAATGGAGATGTGATTTTTAAGGGCTCTGTCCCCCCCCGCCTCCACCATGAGCACTCCCAAGTCATGGGCATAACATGCTTGATATTGTCTGCCATTTAATATCCAATACTTTTTCTTTTGTTACTTAATGCAGGCCTGTTGTTTTACTAGTTAAGTAACTTTTTTGGCTCAGGAATTGTTTTTTTACAGACCACATTTAAGGTTTCCTGATAACTAATCGTTTGTACATATTTCTCATGTTTAGCTTTATTGAAATTACATATCATTTATCTGTACAGAATTATTCTAGGTTACAAAAAGGTATCAGCCTCATTGTCTGTTAGTGGAGGTCTATTTTTTTACTCATCTTAATTGAAAAGTAGGCCTTTAACATAATGAACACTATTACCTATTGACTCATTTTGCATACAAAACACATTTGTTCTCTGTTTTAATAAATTTTATGCAGTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001094553\|Xenopus laevis isocitrate dehydrogenase 1 (NADP+), soluble (idh1), mRNA GCTTGTTGTTTGCTCCTTTAAAACGCCAGGATGTCCAAGAAAATTAATGGTGGTTCTGTGGTAGAAATGCAAGGAGATGAGATGACTCGAGTTATATGGGACCTGATTAAAGAGAAGCTAATTTTGCCCTACGTGGAGTTGGATTTGCACAGCTATGATCTGGGCATGGAGAACCGTGATGCCACAGACGATCAAGTCACAGTGGATGCCGCAGAAGCAATTAAAAAGTACAACGTTGGCATCAAGTGTGCCACTATTACACCTGATGAGAAGAGGGTAGAGGAGTTTAATCTGAAACAAATGTGGAAATCTCCAAATGGAACTATCAGGAATATTCTTGGAGGGACTGTGTTCAGAGAGGCCATCATTTGCAAGAACATCCCAAGGCTGGTTTCAGGATGGATCAAACCCATTATCATCGGTCGTCATGCTTATGGTGACCAGTATAGAGCAACTGACTTTGTGGTCCCTGGGCCAGGCAAAGTGGAAATATCATTCACACCTAAGGATGGAGGGGAGGCCATTAAGTATGTTATCCATAATTTTGAAGACTGCGGAGGTGTTGCTCTTGGGATGTACAACACGGATCAGTCCATTAGAGACTTTGCACACAGTTCTTTCCAGATGGCTCTGTCCAAAAGCTGGCCCCTGTATATGAGCACCAAAAACACCATTCTCAAGAGATATGATGGACGATTCAAAGATATATTCCAGGAAATCTATGAGAAGGAATACAAATCCCAATTTGAAGAAAATAAAATCTGGTATGAACACAGGCTTATTGATGACATGGTGGCACAAGCAATGAAATCTGAAGGAGGCTTCATCTGGGCCTGCAAAAACTATGATGGGGATGTGCAATCAGATTCTGTCGCTCAAGGATATGGCTCTCTTGGCATGATGACTAGTGTGTTGATATGTCCTGATGGGAAGACAGTGGAGGCAGAAGCAGCCCATGGGACAGTAACTCGACATTATAGAATGCATCAAAAAGGACAAGAAACCTCAACCAACCCCATTGCTTCAATCTTTGCATGGTCACGAGGTTTAGATCATAGAGCAAAACTGGATAATAACCAAGAACTTAAGAACTTTGCAACAGCCTTAGAAGAAGTCTGCATTGAAACCATTGAGGCTGGATTTATGACTAAGGACCTTGCTGCTTGTATTAAAGGTTTACCAAATGTGCAACGTGGTGACTACTTAAGTACCTTTGAATTTATGGACAAACTTGGTGAAAATCTGCAGCTGAAGCTTGCTGCTCATCCCAAGCTTTAACAGAGATGTCACTGGGAAAACAGAGCTGTCATACACTGCAATTGTTTACAATATCAGAAGCATTATCTTCTCAATAGAATGTAAAACGTCCATCCCTAGTTAGCACATACTTGAACTTCAGATTCACTTGCAGTCATTTAATTGTAACAGAATGTAAATCATTACTTTGTGTTGGTAATCCATAAGTAAATGAACTCAGTTTTATACATAATGGGACCACTGCAGTCATAAATAATCATAAATCAGGGGAAACCTGTTGCATTCCCACTGGCATAACTTTTTAGGTATGCAAGTGCTGTGGTTTTCAAATCTCAAGTTTGGTTTAAGTTTTCCTTTATTATTTGCAAGACTGAAACATTAAGGGGCCGATTCACTAACTTCGAGTGAAGGATTCGAAGTAAAAAAACTTCGAATTTCAAAGTTTTTTTTGGGCTACTTCGACCATCGAATGGGCTACTTCGACCTTCGACTACGACTTCGAATCAAAGGATTCGAAGTAAAAATCGTTCGACTATTCGATAGTCGAAGTACTGTCTCTTTAAAAAAAACTTCGACCCCCTAGTTCGGCATCTAAAAGCTACCGAAGTCAATGTAAGCCTATGGGGAAGGTCCCCATAGGCTTGGCTAACTTTTTTTGATCGAAGGATATTCCTTCGATCGTTGGATTTAAATCCTTTGAATCGTTCGATTCGAAGGATTTAATCGTTCAATCGAAGGAATAATCGTTCGATCGTACTATCTGCGCTAAATCCTTCGACTTCGATATTCGAAGTCGAAGAATTTTAGTTCCTAGTCGAATATCGAGGGTTAATTAACCCTCGATATTCGACCCTTAGTGAATCGGCCCCTAAGAGATGAATGGAGAATAAGCCTTGTTACAGAAATGTGCTTCCTTAAACTGCTCATTTTACCTCTGCATAAAATACCTTTTGTTTCTTTACCTCTTACCTTCACCAAAGATCTATCTATTCAAAAAAAAAAAAAAA
Protein		Refseq >NP_001004863\|isocitrate dehydrogenase 1 [Xenopus (Silurana) tropicalis] MSKKINGGSVVEMQGDEMTRVIWDLIKEKLILPYVELDLHCYDLGIENRDATDDQVTVDAAEAIKKYNVGIKCATITPDEKRVEEFNLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISFTPKDGGEAIKYVIHNFEDCGGVALGMYNTDQSIRDFAHSSFQMALSKSWPLYMSTKNTILKKYDGRFKDIFQEIYEKDYKSQFEEKKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQG	Refseq >NP_001088022\|isocitrate dehydrogenase 1 [Xenopus laevis] MSKKINGGSVVEMQGDEMTRVIWDLIKEKLILPYVELDLHSYDLGMENRDATDDQVTVDAAEAIKKYNVGIKCATITPDEKRVEEFNLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWIKPIIIGRHAYGDQYRATDFVVPGPGKVEISFTPKDGGEAIKYVIHNFEDCGGVALGMYNTDQSIRDFAHSSFQMALSKSWPLYMSTKNTILKRYDGRFKDIFQEIYEKEYKSQFEENKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLDHRAKLDNNQELKNFATALEEVCIETIEAGFMTKDLAACIKGLPNVQRGDYLSTFEFMDKLGENLQLKLAAHPKL

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.17063 [+] Str.46141 Str.54127 Str.58946	Xl.77849 [+] Xl.12586
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		1 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	IDH1
mouse		MGI	Idh1	All(7) Gene Trapped(1) Targeted, other(3) Targeted, knock Out(1)
zebrafish		ZFIN	idh1	4 Lines(s)

Publications
First:		Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration. [BMC Dev Biol 2011]
Most recent:
		View All Papers

Functional Ontologies
GO: Molecular:		isocitrate dehydrogenase (NADP+) activity isocitrate dehydrogenase activity oxidoreductase activity
Biological:		main pathways of carbohydrate metabolism metabolic process
Cellular Component:
EC:		isocitrate dehydrogenase (NADP+)
KOG:		[C] NADP-dependent isocitrate dehydrogenase

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.17063.1.S1_at [+] Str.13992.2.S1_a_at Str.44132.1.A1_x_at Str.46141.1.A1_at Str.46141.1.A1_x_at
Affymetrix 2.0			Xl2.24438.1.S1_at [+] Xl2.12586.1.S1_at Xl2.54966.1.A1_at

Symbol legend[+]