[provisional- machine annotated only] Gene Symbol: sod1 [Predicted: Source is Human Entrez Gene] Gene Name: superoxide dismutase 1, soluble [Predicted: Source is Human Entrez Gene] Synonyms: als, sod, als1, ipoa Add Xenopus synonyms Gene Function: Cu2+/Zn2+ superoxide dismutase SOD1 Interactants: cat.1(4) , ins(3) , isyna1(2) , nos1(2) , ahr(1) , akt1(1) , bpi(1) View All

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001016252|Xenopus (Silurana) tropicalis superoxide dismutase 1, soluble (sod1), mRNA CTCGGTAGCTGCAGTCATGGTGCGGGCGGTGTGTGTGCTGGCGGGAAGCGGCGACGTGAAGGGGGTGGTGCACTTCCAGCAACAGGACGAAGGCCCAGTGACAGTTGAAGGGAAGATTTACGGCCTGACTGACGGAAAGCACGGCTTCCATATCCATGAGTTTGGCGACAACACCAACGGCTGTATCAGCGCGGGCCCTCATTTCAACCCAGAGAGCAAGACTCACGGGGCCCCAGAAGATGCAGTCAGGCACGTCGGGGATCTTGGCAATGTGACGGCCAAAGATGGCGTGGCGGAGTTCAAATTGACAGATTCCCTCATTTCACTGAAAGGCAATCACTCGATCATTGGCCGCTGTGCTGTGGTCCACGAGAAGGAAGATGACTTGGGCAAAGGAGGCAACGATGAGAGTCTGAAAACTGGCAATGCCGGTGGGCGCCTGGCTTGTGGCGTGATTGGCTTATGCCAGTGAGCGTCTCCGGCACCTAATGCCCCAAAGCACTTAGTTTCTGTTGGTTGGTCTCCCTGTTTGTGTTTCACCCCCCCGCGTTCTCTCTGCACTCAGTAACCGCTCTTGTTCTCGTTGTGTTCGACAGAATAAAGGACGCACAGTTGTCGCCAATCCAACATGTTCAAAAATTTTATATAAAGTTACTATTTCACTGTATCATCTGCGAGTTATTCCTACTGAGCATGTGATTAAATGCGATTGTGCGTCTGGGAGCCCAAAAAAAAAAAAAAAAA	NCBI Nucleotide >X16585|Xenopus Laevis Cu,Zn-SOD mRNA for Cu-Zn superoxide dismutase (EC 1.15.1.1) GTGAAGGCGGTGTGTGTGCTGGCGGGAAGCGGCGATGTAAAGGGTGTGGTGCGCTTCGAGCAACAGGACGATGGTGACGTGACAGTGGAAGGGAAGATCGAGGGTCTGACTGACGGAAATCACGGCTTCCATATCCACGTGTTTGGGGACAACACTAATGGCTGTCTCAGCGCCGGCCCTCATTTCAACCCGCAGAACAAGAATCACGGATCCCCCAAAGATGCCGACAGGCACGTTGGGGATCTTGGCAATGTGACGGCTGAAGGTGGTGTTGCTCAGTTCAAATTCACAGACCCTCAGATCTCCCTGAAAGGCGAGCGCTCGATCATTGGCCGTACTGCTGTGGTCCATGAGAAGCAAGATGACTTGGGCAAAGGTGGAGATGACGAGAGTCTGAAAACTGGCAACGCCGGGGGTCGCTTGGCATGTGGTGTGATTGGATTCTGCCCGTGACCATGTC		Refseq >NM_001087464|Xenopus laevis Cu,Zn superoxide dismutase (sod1-b), mRNA GCATTATCTCGCAAGCTGTGCTGCTGCTGCTCTAGAACTCTCCAGTGTCTGTCTGTCAGTAGTTGTGCTGCAACCATGGTGAAGGCAGTGTGTGTGCTGGCGGGAAGCGGCGATGTGAAGGGAGTGGTGCACTTCGAGCAACAGGATGAAGGAGCAGTGAGTGTGGAAGGGAAGATCGAGGGACTGACTGACGGACTGCACGGCTTCCATATTCATGTGTTTGGGGACAACACTAATGGCTGCATGAGCGCTGGATCTCATTTCAACCCCGAGAACAAGAATCACGGAGCCCCGGGAGATACAGACAGGCACGTGGGAGACCTGGGCAATGTGACGGCTGAAGGTGGAGTCGCTCAGTTCAAAATCACAGATTCTCTGATCTCCCTGAAAGGCCCAAACTCCATCATTGGCCGCACTGCTGTGGTCCATGAAAAGGCAGACGACTTGGGCAAAGGTGGAAATGACGAGAGTCTGAAAACGGGCAATGCTGGGGGTCGTCTGGCTTGTGGTGTGATTGGTTATAGTCCGTGATCGACTCCCCGAAGCATTTAGTCTCCTTGTTGTCTCATCGGCACTTGTTCTCCTTCTCTCCGCACTCAGTTACCGCTCTCCATTCTTCTTGTGTTTATCTGACTGAATAAAGGACACACCTTTGTCACCAATCCAACTTGTTCCTGAATTTTATATAAACTTATTAGAACTGATTCCTCTGTGTGATGTTCAGTCTGATGACTTGATTATTATTAATATTATTGTTATTACAGTGGAACACGAGTTACTTATCTAGTAAATAAGGGTGATGTGAATTTATTATTCCCTCAGACTGACATTTGCTCCCCGCCGAAATAAACTCGAATGTCAGGAAGGCTGCAAACATCACCAAATTGATCCCAGGACATCTCCCATTGACTTATACAGTAATTCGGCAGGTTTTAGGTGGCTAATTGTCGAATTTGAGTTCTTCAAGGGCCAGAATATGATAAATCTCAAAATTCGAATTAAAACTCGAATAGAGTTTGAATAATTCACAGTTTGAAGTTTGAGAGTTTTGAGCAATAAAAATTCGAATTTTCACTTTAACCCTTTGTCGTATGTAGGTTCATAAAGACAGCTTGTGTGCCCCTCCTAAAGTCTAAACAGTCCGACCAATCACTGTTTTGGGTATAAATTCTATTTCTACGTGGCAAATAATTTACTAGTAGGTGTAGTAGAGTAATCGAAACCCAACATTCATGACATGCTGCTAATTCTGTGTCATTGTATCATTAATTGAGGCTTGTTTCAAATAGCATTGATCAAAATAATAAGTTTGTTACAAATAATAGCAGTGTGGAGCAGCCTTATTATTTTGATCAATGCTATTGACAAGCTGAAACTTTAGGCTGGTGCAATACGTTCATTATATAAAATATGGCATTTTAAGGCACATTCATTTTTAGGGTTTAGTTCTCCTTTGTCGTATGTAGGTTCATAAAGACAGCTTGTGTGCCCCTCCTAAAGTCTAAACAGTCCGACCAATCACTGTTTTGGGTATAAATTCTATTTCTACGTGGCAAATAATTTACTAGTAGGTGTAGTAGAGTAATCGAAACCCAACATTCATGACATGCTGCTAATTCTGTGTCATTGTATCATTAATTGAGGCTTGTTTCAAATAGCATTGATCAAAATAATAAGTTTGTTACAAATAATAGCAGTGTGGAGCAGCCTCTTTCTTTCTCCTGACAACTTCCTTGACTACTTGGTGATCAGACTGGTCAGAAAATGACCAGCAGGTGGTGCTATTGTAACACAATTCATTTATATTAACAGCACATGTATCCCTTAATATCTTTTAATAAAAAAAAAATACTTTTTTTAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016252|superoxide dismutase [Xenopus (Silurana) tropicalis] MVRAVCVLAGSGDVKGVVHFQQQDEGPVTVEGKIYGLTDGKHGFHIHEFGDNTNGCISAGPHFNPESKTHGAPEDAVRHVGDLGNVTAKDGVAEFKLTDSLISLKGNHSIIGRCAVVHEKEDDLGKGGNDESLKTGNAGGRLACGVIGLCQ UniProtKB	NCBI Protein >CAA34602|Cu-Zn superoxide dismutase C-terminal fragment (150AA) [Xenopus laevis] VKAVCVLAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNVTAEGGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGGDDESLKTGNAGGRLACGVIGFCP UniProtKB		Refseq >NP_001080933|superoxide dismutase [Cu-Zn] B [Xenopus laevis] MVKAVCVLAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAEGGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGGNDESLKTGNAGGRLACGVIGYSP UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase
Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.1999	Xl.1162		Xl.42
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SOD1	OMIM:105400
mouse		MGI	Sod1	All(7) Targeted, knock Out(5) Targeted, other(2)
zebrafish		ZFIN	sod1

Publications
First:		Species-specific effects of neurotensin on gallbladder contraction in vitro. [Dig Dis Sci 1989]
Most recent:		Reactive oxygen species and anti-oxidant defenses in tail of tadpoles, Xenopus laevis. [Comp Biochem Physiol C Toxicol Pharmacol 2013]
		View All Papers 1 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		copper, zinc superoxide dismutase activity iron superoxide dismutase activity manganese superoxide dismutase activity More[+] metal ion binding nickel superoxide dismutase activity superoxide dismutase activity
Biological:		superoxide metabolic process
Cellular Component:
EC:		superoxide dismutase
KOG:		[P] Cu2+/Zn2+ superoxide dismutase SOD1

Reagents		tropicalis	laevis a		laevis b
Clones		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.1999.1.S1_at	Xl.1162.1.S1_at		Xl.42.1.A1_at
Affymetrix 2.0			Xl2.1162.1.S1_at		Xl2.42.1.S2_a_at [+] Xl2.42.1.S1_at

Symbol legend[+]

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