lsm6 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

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Nucleotides (165)

Interactants (0)

XB-GENEPAGE-1007007

[provisional- machine annotated only] Gene Symbol: lsm6 [Predicted: Source is Human Entrez Gene] Gene Name: LSM6 homolog, U6 small nuclear RNA associated [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: mRNA processing Interactants:

XB-GENE-1007008

XB-GENE-1007013

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001171597\|Xenopus (Silurana) tropicalis LSM6 homolog, U6 small nuclear RNA associated (lsm6), mRNA CTTGTTTTTGGATTGTCCTGAGACGGACACCGTAAAAAGGGGTAGGAAGGAGAGAGGCGGGAGAAAAGGCATCGCACGGGATACAGGTGAAAGGGAATTAGAATGAGCCTGCGCAAACAAACACCGAGTGACTTCTTAAAGCAGATTATTGGAAGACCAGTGGTTGTAAAGCTCAACTCTGGAGTCGATTATCGAGGTGTTCTGGCATGTTTAGATGGTTACATGAATATTGCTTTGGAACAAACAGAAGAGTATGTGAATGGACAGCTGAAGAACAAGTATGGGGATGCATTTATCCGAGGAAATAATGTTTTGTATATTAGCACTCAGAAGAGGAGGATGTGACCTGTGTTTTTTTTAATTTACTTTTCATTTTTAATTATATTATGTTCTTTGCATTAAGAGCGCAGCATTTTGGACTTCAGAAGATCAAGGTCTATACATTTATGTTTGAGACTTAAGATGAAGTTGCATTGCTAAATACATTTTGAAAAGAAAAACACTTTTTCATAAAGTTTGATAAACATTTTGGTTTATGATGATCTGTACTGCTGTAAAATAAACAACAGTCATGAAAAAAAAAAAAAAAAAA	Refseq >NM_001093849\|Xenopus laevis LSM6 homolog, U6 small nuclear RNA associated (lsm6), mRNA ACGCGTCTTGCGTTGTGTTTGGATTGACCTGGGACGGACGCCGTAAAAAAGGAGGCGTAGAACGGAAATAGAGAGGCGGGAGGTTAAAAAAGCGCATCGCACGAGATACAGAGTGAGAGTTTAGCGATTATATCTGGCCTGTGTCCGTAGTCAAAGGAAACTAGGATGAGCCTGCGCAAACAAACACCAAGTGACTTCTTAAAGCAGATTATCGGAAGACCAGTGGTGGTAAAGCTCAACTCTGGAGTTGATTATCGAGGTGTTCTGGCATGCTTAGATGGCTACATGAATATTGCTTTGGAACAAACTGAAGAATATGTGAATGGACAGCTGAAGAACAAATATGGGGATGCATTTATCCGAGGAAATAATGTTTTGTATATAAGCACTCAGAAGAGGAGGATGTGACCTGTTCTGCTTTCATTTCTTTTTATTTTTTAATTTTATGTTCTTTGCACGAAGAGCCCAGCATTTTGGACTTCAAAAGATCATTCATTTCTGTTTTGAGACTCAAGTGAAAACGGCATCACTACATACATTTTGAGAATTGAAAATACTTTTATAAAGTTATTTTGGTTTACAATGATCTGTACTGATGTAAAATAAACAGTCATGAAATCAGTTTGGTTTTGACCATAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001165068\|Sm protein F [Xenopus (Silurana) tropicalis] MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM	Refseq >NP_001087318\|Sm protein F [Xenopus laevis] MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.41734 [+] Str.56152	Xl.48776 [+] Xl.55088 Xl.69397
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	LSM6
mouse		MGI	Lsm6
zebrafish		ZFIN	lsm6

Publications
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Most recent:
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Functional Ontologies
GO: Molecular:
Biological:		mRNA processing
Cellular Component:		nucleus ribonucleoprotein complex small nucleolar ribonucleoprotein complex
EC:
KOG:		[A] Small nuclear ribonucleoprotein F

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.7443.1.S1_at	Xl.3336.1.S1_at
Affymetrix 2.0			Xl2.48776.1.S1_at

Symbol legend[+]