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Summary Expression Gene Literature (33) GO Terms (8) Nucleotides (115) Proteins (42) Interactants (778) Wiki
XB-GENEPAGE-480736
Gene Symbol:
hoxa1

Gene Name:
homeobox A1

Synonyms:
xhox.lab2 , Xhox.lab , xhoxa1 , bsas , hox1f , hoxa1-a , hoxa1-b ( Add synonyms , Nomenclature history )

Gene Function:
homeodomain transcription factor

Protein Function :
Sequence-specific transcription factor. Part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body struc...[+]


InterPro :
Homeobox dom , Homeobox metazoa , Homeobox CS , Homeobox-like sf [+]

Interactants:
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Diseases: 


Disease Ontology:
Athabaskan brainstem dysgenesis syndrome

OMIM:
ATHABASKAN BRAINSTEM DYSGENESIS SYNDROME; ABDS

External Links:
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Xenbase Gene ID XB-GENE-480737 XB-GENE-480741 XB-GENE-6252179
Gene Symbol hoxa1 hoxa1.L hoxa1.S
Chromosome Chr6 chr6L chr6S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.1 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 493379
373787
397903
mRNA RefSeq NCBI Nucleotide NCBI Nucleotide
Protein NCBI Protein RefSeq  More.. NCBI Protein RefSeq  More.. NCBI Protein NCBI Protein  More..
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine hoxa1 hoxa1.L hoxa1.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards HOXA1 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Hoxa1 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Hoxa1 Ensembl
zebrafish
ZFIN, AGR hoxa1a ZFIN Ensembl
chicken
GEISHA HOXA1 Ensembl
fruit fly
worm
Publications
First Retinoic acid perturbs the expression of Xhox.lab genes and alters mesodermal determination in Xenopus laevis., Genes Dev 1991  
Most Recent Chromatin accessibility and histone acetylation in the regulation of competence in early development., Dev Biol 2020  
All View All Papers 5 paper(s) referencing morpholinos 1 paper(s) referencing OMIMs 2 paper(s) referencing Disease Ontology
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 7 terms 5 terms 6 terms
PANTHER hoxa1
KEGG Pathways K09301 K09301 K09301
KOG [R] Transcription factor zerknullt and related HOX domain proteins
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks hoxa1
Morpholinos (on-target & off-target) hoxa1 MO2 hoxa1 MO1 , hoxa1 MO2 hoxa1 MO1 , hoxa1 MO2
ORFs hoxa1 ORF1 hoxa1.L ORF1
Clones Horizon Source BioScience Horizon Source BioScience Horizon Source BioScience
Plasmids Addgene Addgene

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info