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Summary Expression Gene Literature (2) GO Terms (17) Nucleotides (677) Proteins (25) Interactants (106) Wiki
XB-GENEPAGE-483860
Gene Symbol:
lsm2

Gene Name:
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated

Synonyms:
( Add synonyms , Nomenclature history )

Gene Function:
U8 snoRNA binding

Protein Function :
Binds specifically to the 3'-terminal U-tract of U6 snRNA.


InterPro :
Homeobox metazoa , Homeobox dom , Homeobox CS , Homeobox-like sf [+]

Interactants:
Loading ...

Diseases: 


External Links:
 
Xenbase Gene ID XB-GENE-483861 XB-GENE-17330256 XB-GENE-865023
Gene Symbol lsm2 lsm2.L lsm2.S
Chromosome Chr8 chr8L chr8S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.2 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 549156
100134834
108700236
mRNA NCBI Nucleotide RefSeq NCBI Nucleotide
Protein NCBI Protein RefSeq RefSeq NCBI Protein RefSeq
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics X. tropicalis X. laevis.L X. laevis.S
Embryonic Protein Expression Stage profile:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine lsm2 lsm2.L lsm2.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards LSM2 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Lsm2 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Lsm2 Ensembl
zebrafish
chicken
fruit fly
worm
Publications
First Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence., Mol Cell Biol 2002  
Most Recent Opposite T3 Response of ACTG1-FOS Subnetwork Differentiate Tailfin Fate in Xenopus Tadpole and Post-hatching Axolotl., Front Endocrinol (Lausanne) 2019                
All View All Papers
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 14 terms 0 term 8 terms
PANTHER lsm2
KEGG Pathways K12621 K12621
KOG [A] Predicted snRNP core protein
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks lsm2
ORFs lsm2 ORF1
Clones Horizon Source BioScience Horizon Horizon Source BioScience
Plasmids Addgene Addgene

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