carm1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (3)

Nucleotides (153)

Interactants (14)

XB-GENEPAGE-484571

Gene Symbol: carm1 Gene Name: coactivator-associated arginine methyltransferase 1 Add Xenopus synonyms Gene Function: methyltransferase Interactants: cdkn1a(1) , crebbp(1) , esr1(1) , esr2(1) , grip1(1) , lgals12(1) , ncoa1(1) View All

XB-GENE-484572

XB-GENE-865101

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		NCBI Nucleotide >BC167706\|Xenopus tropicalis coactivator-associated arginine methyltransferase 1, mRNA (cDNA clone IMAGE:6986844), partial cds GTCGGTGTTTCCCGGCGTGCGGCTCCTCAGTATCGGGGACGCGAATGGGGAGATCCAGAGACACGCTGAGCAGAGGGAGCTGCGGCTGGAGGCCCGGGGAGGCGACATTGCGCTGTACAACGCTGAAAACGTCTGCGTGTTCAAATGCACGGTCTCGCGCGACACGGAGTGCAGCCGGGTGGGGAAACAGTCTTTCATTGTCACCCTGGGCTGCAACAGTGTCCTGGTCCAGTTTGCCACACCAGCAGATTTCTGCTCCTTTTACAACATCATCAAGGGCTGCCGAACTCCGGCCTCGGAGAAGAGCGTGTTCAGCGAGCGGACAGAGGAGTCGTCGGCGGTACAGTACTTCCAGTTTTACGGGTATCTCTCACAGCAACAGAACATGATGCAGGACTATGTGAGGACCGGAACGTACCAGAGGGCCATACTGCAGAACCATACGGACTTCAAAGACAAGGTGGTGTTGGACGTTGGTTGCGGCTCAGGAATCCTCTCCTTCTTTGCAGTTCAGGCCGGTGCCCGCAAGGTGTACGCAGTGGAAGCCAGCACCATGGCACAGCATGCAGAGCTGCTGGTGAAAAGCAACAATCTGACCGATCGCATTGTGGTCATACCCGGCAAGGTAGAGGAGACCGCCCTCCCAGAGCAGGTGGATATTATCATCTCTGAGCCAATGGGGTACATGCTGTTTAACGAGAGGATGCTGGAGAGTTACCTGCACGCAAAGAAGTTCCTCAAGCCTAATGGTAACATGTTCCCCACAATAGGAGACGTGCATTTGGCGCCATTCACAGACGAGCAGCTTTACATGGAACAGTTTACAAAGGCCAATTTCTGGTACCAGCCATCGTTTCATGGAGTGGATCTCTCAGCTCTGCGCGGGGCAGCGGTGGACGAGTATTTCAAGCAGCCAGTCGTGGACACCTTCGATATCCGGATCCTCATGGCCAAATCAGTCAAGTACACAGTGAATTTCCTTGATGCCAAAGAGGCCGATCTGCACAGGATAGAGATCCCTTTCTCCTTCCACATGCTGCACTCCGGCTTGGTGCACGGTTTAGCTTTCTGGTTTGACGTGGCCTTTATCGGATCCATAATGACCGTCTGGCTGTCGACAGCCCCGACCGAGCCTCTCACTCACTGGTACCAGGTCCGCTGTCTCTTACAGTCGCCGTTATTCACCAAAGCCGGGGACACCTTGACCGGCACCGCGCTGCTCATTGCCAACAAGAGGCAGAGTTATGATATCAGTATTGTTGCTCAGGTGGATCAGACTGGGTCCAAGTCAAGTAACCTGCTGGATCTGAAGAACCCCTTCTTCAGGTACACGGGCTCCACGCCGTCTCCTCCCCCCGGCTCCCACTATTCCTCCCCTTCAGAGAACATGTGGAATACGTCAGGGGCATACTCAATGAACACAGGAATGGGCATGGGAGGAATGCCCAACGCCTATGATCTCAGCAGTGTTATAGCTGGAAGCTCAGGCATCAGCCACAGTAACCTCATCCCTCTAGGTGAGCAGCCTGCAGTGTCCTGCCCTCCCGCGCCGCTGCACCCGGAGCCCCAAGACCTGACACTCGGATCCTCCACAAACACGGGGATTGTCAATCACACTCACTCCAGGATGGGATCCATCATGAGCACGGGGATAGTGCAAGGATCCGCGGGGGGCCAGGCCGCCTCCAACACCACCAGCCACTACCCTGTCAACAACCAGTTCACCATGGGAGGCCCCGCTATCTCCATGGCTTCTCCCATGTCTATCACCACCAACACAATGCATTATGGGAGTTAAAGCTTGCTCAGTCTCACTTTATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001094676\|Xenopus laevis coactivator-associated arginine methyltransferase 1 (carm1), mRNA AGCAAACATGGCGGCGGTGTCGGTGTTTCCCGGCGTGCGGCTCCTCAGTATCGGGGACGCGAATGGGGAGATCCAGAGACACGCGGAGCAGAGGGAGCTGCGGCTGGAGGCGCGGGCAGGAGACATCGCGTTATATAATGCTGAAAACGTCTGTGTGTTCAAATGCACCATCACCAGGGATACGGAGTGCAGCCGCGTGGGCAAGCAGTCGTTTATTGTCACCCTGGGCTGTAACAGTGTCCTAGTCCAGTTTGCCACACCAGCAGATTTCTGCTCATTTTACAACATCATAAAGAGCTGCCGCTGTCCGGCCACGGAGAGAAGTGTTTTCAGTGAGCGGACAGAAGAGTCGTCGGCGGTGCAGTACTTCCAGTTTTACGGGTATCTCTCTCAGCAGCAGAACATGATGCAGGACTATGTGAGAACAGGGACGTACCAGAGAGCCATCCTGCAGAACCACACGGACTTCAAAGACAAGGTTGTCCTGGACGTTGGCTGTGGCTCAGGAATCCTCTCCTTCTTTGCAGTCCAGGCTGGTGCCCGCAAGGTGTATGCGGTGGAGGCCAGCTCCATGGCACAGCACGCTGAGCTGCTGGTGAAAAGCAACAATCTAACCGACCGCGTTGTGGTAATACCAGGGAAGGTGGAGGAGATCTCCCTGCCAGAGCAGGTGGACATGATCATCTCTGAGCCGATGGGATACATGCTGTTCAACGAGCGCATGCTGGAGAGTTACCTACATGCAAAGAAGTTTCTGAAGCCTAATGGTAACATGTTTCCTACAATAGGAGATGTGCACTTGGCCCCATTCACAGATGAGCAGCTTTACATGGAACAGTTTACAAAGGCCAATTTCTGGTATCAGCCGTCGTTTCACGGAGTGGATCTCTCTGCTCTGAGAGGTGCTGCGGTGGACGAGTATTTCAAACAGCCAATAGTGGACACTTTCGATATCCGGATCCTGATGGCCAAATCCGTCAAGTACACAGTCAATTTTCTCGATGCCAAAGAGACTGATCTGCACAGGATAGAGATTCCGTTCTCCTTCCACATGCTTCACTCCGGCCTGGTGCACGGTTTAGCTTTCTGGTTTGACGTGGCCTTTATCGGATCCATAATGACCGTTTGGCTCTCTACTGCCCCGACCGAGCCTCTCACTCACTGGTACCAGGTCCGCTGTCTCCTGCAGTCGCCGATATTCACCAAAGCCGGGGACACCTTGTCTGGGACTGTGCTACTCATTGCTAACAAGAAGCAGAGTTATGATATCAGTATTGTTGCTCAGGTGGATCAGACTGGTTCCAAATCAAGTAACCTGCTGGATCTGAAGAACCCCTTTTTTAGGTACACTGGCTCCGCGCCGTCTCCTCCTCCCGGGTCCCACTATTCCTCCCCTTCGGAGAACATGTGGAACACAGGAGGGGCATATACAATGAACACAGGAATGGGCATGGGAGGAATGCCCACGGCCTATGATCTCAGCAGTGTTATAGGTGGAAGCTCAGGCATCAGCCACAGTAACCTCATCCCTCTAGGTGAGCCTCCTGCAGTCTCCTGCCCTCCTGCACCGCTGCACTCGGAACCCCAAGACCTGACACTCGGAACCTCCACAAACACAGGGATTGTCAATCACACCCACTCCAGGATGGGATCGATCATGAGCACGGGCATAGTGCAAGGATCTGCAGGAGGACAGGCTGCTTCCAACTCCTCCAGCCACTACCCCGTCAACAACCAGTTTACCATGGGAGGTCCTGCTATCTCCATGGCTTCTCCCATGTCTATCACCACCAACACAATGCATTATGGGAGTTAAAGCTTGCTCATCCTCACCTTTCTCCCTGCTGCCCTGTCCTCCTTAAACTGACAGTATCAGGATACCAAATGATTGCAGAGCACCCTCTCTGCTCCTCCTGCCCTTCCTTTTCCTCCTACTGCTCAGTCGCGTCTTTGCCTCCTCACCTTTACGCCTGCCCCTACATCTTTTGCCTCCGAGCACATCCTCTTGCTTTCTGAATATGGACTTGTACATTTTTTTTTATAATGAAATACGTTACACCCCCCCCCCTCACATTATGAAGGAGAAGGAACAAAAAATAGCAAATAGAGGGGGGTGGGGAAGATGATCGCAACGCTTGTACATTACTGGAAATTCTAAACCAATCATGTGTTGCTTCTCAAACTGTCGCCTAGCACATGGATTCTCCTCCCTCTGTGCAGCCTTAGAGTCATTGCTGTGAATTTGTATCATGCTTATCTGTTAGGGGAAAAAAACAGAATCGATGGCTGGTGTAGGGGGTACAGGGCAAGGAGAGGGGGAGCATTGCAGGAATAGGGTAATCTTGACTTTCCGTAGGCAAGGAGTCGTTTCACTTGTTCTGACTCATGACCAACGCTTCATATATATTTTCTTCTTTTTGGAAGGCAACTAACAGAATTAATTACCTAAATGAAGTTGTTAGAATTAGCTGGAAGCCAACCACAATCTACTTTCATTGTGTCATGAAACACTAAATGTGCCCCCTCCCCCCACCCAGTATAATAGGACTCTCTGCCCTGTAAGGAAAGGGTCATGTGATGCTGATGAAAAATAAAGGGTTAGGATGATTGTTTATCATTTAAAGCCAAAACCCCCTATTGAAATGTGAATTTACTTTATCCCCCCCCTTCCTCTTTACATGAACTGTTTCCGACTTTCCGTGCAACAGGTTCCGTTATCTTGGCCTTTTCCTTCTTCCTACCTCTGCCCTCGTCGTTAGTGCATGGTCACAATGCATCAAGATGGCCCAAGTGTCCGTCCTTTTTAGGAGTTTTCTTTCTTTAAAATTAAAAAATGCTTGACGCCCCGCTTAGATCCCCCATAGTGTTAGAGCCATGTGCTTGTAAACTAGCGATGTCCCCTTTAAATCTCCCGCTGCTTAGTGTGTACTCATTTGCTCCTTTTTAGTATTTTATTTCTCGTTCTCTCTAGGGAATTTGTCGTCTCGCAGGGTCCCTTGTTATTTGTAACCTGTCTATTATTATTATTTGCGTCTCGTCTGTCCCGCGCGGGGCAGCACATTGTAGTTGTAAAGATGGGTTTTCAAAGTGGGGAGTCTCAGGACGAGTAGGAAACCGTTTCTAACACAACTGCTGTTCTCCCGTTTGCCTGTAGTGTTCAATAAAGTTGGGAGGGAATTTTTTTTAAAAAAAAAATAAAAAGCGTACTGTGGATTTTTAAAAAAAAAAAAAAA
Protein		NCBI Protein >AAI67706\|carm1 protein [Xenopus (Silurana) tropicalis] SVFPGVRLLSIGDANGEIQRHAEQRELRLEARGGDIALYNAENVCVFKCTVSRDTECSRVGKQSFIVTLGCNSVLVQFATPADFCSFYNIIKGCRTPASEKSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKVVLDVGCGSGILSFFAVQAGARKVYAVEASTMAQHAELLVKSNNLTDRIVVIPGKVEETALPEQVDIIISEPMGYMLFNERMLESYLHAKKFLKPNGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFKQPVVDTFDIRILMAKSVKYTVNFLDAKEADLHRIEIPFSFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLLQSPLFTKAGDTLTGTALLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGSTPSPPPGSHYSSPSENMWNTSGAYSMNTGMGMGGMPNAYDLSSVIAGSSGISHSNLIPLGEQPAVSCPPAPLHPEPQDLTLGSSTNTGIVNHTHSRMGSIMSTGIVQGSAGGQAASNTTSHYPVNNQFTMGGPAISMASPMSITTNTMHYGS	Refseq >NP_001088145\|histone-arginine methyltransferase CARM1 [Xenopus laevis] MAAVSVFPGVRLLSIGDANGEIQRHAEQRELRLEARAGDIALYNAENVCVFKCTITRDTECSRVGKQSFIVTLGCNSVLVQFATPADFCSFYNIIKSCRCPATERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKVVLDVGCGSGILSFFAVQAGARKVYAVEASSMAQHAELLVKSNNLTDRVVVIPGKVEEISLPEQVDMIISEPMGYMLFNERMLESYLHAKKFLKPNGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFKQPIVDTFDIRILMAKSVKYTVNFLDAKETDLHRIEIPFSFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLLQSPIFTKAGDTLSGTVLLIANKKQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGSAPSPPPGSHYSSPSENMWNTGGAYTMNTGMGMGGMPTAYDLSSVIGGSSGISHSNLIPLGEPPAVSCPPAPLHSEPQDLTLGTSTNTGIVNHTHSRMGSIMSTGIVQGSAGGQAASNSSSHYPVNNQFTMGGPAISMASPMSITTNTMHYGS UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.67592 [+] Str.36360 Str.31899 Str.56637	Xl.29486 [+] Xl.19433
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	CARM1
mouse		MGI	Carm1	All(4) Targeted, knock Out(1) Targeted, other(3)
zebrafish		ZFIN	carm1	2 Lines(s)

Publications
First:		Estrogen response element-dependent regulation of transcriptional activation of estrogen receptors alpha and beta by coactivators and corepressors. [J Mol Endocrinol 2004]
Most recent:		Identification of a novel inhibitor of coactivator-associated arginine methyltransferase 1 (CARM1)-mediated methylation of histone H3 Arg-17. [J Biol Chem 2010]
		View All Papers

Functional Ontologies
GO: Molecular:		ATP binding S-adenosylmethionine-dependent methyltransferase activity aminoacyl-tRNA ligase activity
Biological:		tRNA aminoacylation for protein translation
Cellular Component:
EC:
KOG:		[OK] Protein arginine N-methyltransferase CARM1

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.36360.1.S1_s_at [+] Str.36360.1.S1_at Str.50896.1.S1_at Str.31899.1.S1_at Str.42746.1.S1_at Str.42746.1.S1_s_at Str.42746.2.A1_at	Xl.9644.1.A1_at [+] Xl.19433.1.A1_at
Affymetrix 2.0			Xl2.29486.1.S1_at [+] Xl2.53196.1.S1_at Xl2.19433.1.A1_x_at Xl2.19433.1.A1_at

Symbol legend[+]