lig3 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Nucleotides (198)

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XB-GENEPAGE-5788003

[provisional- machine annotated only] Gene Symbol: lig3 [Predicted: Source is Human Entrez Gene] Gene Name: ligase III, DNA, ATP-dependent [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: DNA ligase Interactants:

XB-GENE-5788004

XB-GENE-5788023

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016351\|Xenopus (Silurana) tropicalis ligase III, DNA, ATP-dependent (lig3), nuclear gene encoding mitochondrial protein, mRNA AAGAAAACAGATTTTTCATTATTAGAGCAATAGGTGGTCTATGAGGGCATTTCTTAGACTTCTGGCATATCAGACCAAAAGGACACTTGGCCAGTCCTTAACAAAAGTTCCTTTACGAGTTATTTTTCATGCCTGTTGGAGCCAGTCGCCTCTCCACAGTGCTTTGCACTTCCAATTCTTTTTAAGAGTTACACATTTCTCCAACATGGCGGAACAGCGATACTGTGTGGAATATGCAAAACGTGGGACTGCTGGTTGCAAGAAATGCAAGGAGAAGATTGGAAAGGGTTTGGTACGCATAGGTAAAATAGTGCCAAACCCTTTTAGCGAGTCTGCTGGGGACATGAAGGAGTGGTACCACATCAAGTGCATGTTTGAGAAACTGGAGAGAGCGCGGGCAACTACAAAAAAAATTGATGATCTGACAGAACTGGAAGGTTGGCAGGAACTTCAAGACTGTGATAAAAACCTAATCAGCCAGCATGTCACTGAACTTGCTACAAAAACAGCAGCTACACCTCGAAAAAAGACTCCGTCCAAGGAAAAACAATCACCGGCAGTACAAGGAACAACTTCCACTACAGCACCAGCAGCTAGTCCCTCTCTAAAATTTTCAGGTTTCTCTGCAAAACCCAGTCAATCATCAAGCCCACCAAGCTCAAGCACTGGCTCCAGTCTTTCAACTGCAAAGTGTGACCCAAAACATAAGGACTGTCTTCTGCGTGAGTTCCGCAAGCTATGTGCAATGGTTGCGGAACAGCCAAGCTACAACAGCAAAACACAGATCATTCGTGATTTCCTAACCAAGGGAACAAGTGGCGATGGTTTTCATGGTGACACATATCTGACAGTAAAACTGCTATTACCAGGAGTTATCAAGTCTGTGTACAACCTCAATGATAAGCAGATTGTTAAACACTTTAGTCGTATTTTTAATTGTAACCAGGAGGAGATGGTTCGGGACCTAGAACAGGGAGATGTGTCTGAAACTGTGCGTATCTTCTTTGAGGAAAGTAAATGCTTTGCACCAGCTTCTAAGAGTTTACTGACAATCCATGAAGTTGATGATTTGCTTACTAAACTATCAAAAATGACTAAAGAAGAAGATCAACAGAATGTCCTAGAGGACATTGCTCACAGGTGCACCAGTAATGATCTTAAATGCATTATCCGCCTGATTAAACATGACTTGAAAATGAACTCTGGAGCCAAACACGTGCTGGATGCTCTAGATCCTAATGCATATGATGCATTTAAAGCTTCGCGCAATCTAGGGGATGTAGTAGAACGTGTTTTGCGCAACGAGCAGCAGGCTCCAGGAATGAAACGAACTCTTAGTGTCCAGGCTTCATTAATGACCCCAGTTCAGCCTATGCTGGCTGAAGCTTGCAAATCTATAGAGTATGCCATGAAAAAGTGTCCCAATGGTATGTATGCTGAAATAAAGTATGATGGTGAAAGAGTCCAAGTACATAAGAATGGAGATCACTTCAGCTACTTCAGCCGCAGTCTGAAGCCAGTGCTGCCCCATAAGGTTGCTCATTTTAAGGATTTTATACCTAAAGCATTTCCAGGAGGAAACAGTATGATCCTGGATGCAGAAGTTCTTCTTATAGATACCAATACTGGCAAGCCACTTCCATTTGGCACATTAGGTGTTCATAAGAAAGCTGCTTTCAAAGATGCCAATGTGTGCTTGTTTGTTTTCGATTGCATTTACTTCAATGGAGTGAGCTTAATGGATCGGCCACTTAGTGAGCGCCGAAAGTTTATGCGGGATAACATGGTTGAAATCCCTAATCACATTCTGTTCTCTGAGATGAAACATGTCACAAAAGCTTCTGATCTGGCTGACATGATCACCCGTGTTATCCGTGAGGGATTGGAGGGTCTGGTATTAAAGGACTTAAAGAGTAATTATGAGCCAGGGAAACGTCATTGGCTTAAAGTAAAGAAGGATTACTTGAATGAAGGTGCAATGGCAGACACCGCTGACTTGGCAGTTTTGGGAGCTTATTATGGAAAGGGAGCAAATGGGGGTATAATGTCCATCTTTCTCATGGGTTGCTATGATCCTGAAAGTCAGAAGTGGTGCACTGTGACAAAATGTTCAAGTGGTTATGATGATGCTACTCTGCAACGCCTTCAGAAGGAGCTTAACATGGTCAAAATCAGCAAGGATCCATCTAAGATTCCATCATGGCTTAAAATCAACAAGAACTATTTCCCAGATTTCATTATACATGATCCCAAGAAAGCTCCCATTTGGGAAATTACAGGTGCAGAGTACTCAAAGGCAGAGGCTCATACAGCTGCTGGGTTATCCATTCGCTTCCCACGCTGCACACGTTTCCGTGATGATAAGGACTGGAAAACAGCCACTACACTCCAACAGCTAAAGGAACTTTATCGTCTCTCAAAAGAAAAATCTGACTTTAACATCACTGCTACATCCTCTCAGGATGAGGATGGTTCATCTGAAAGCAGTAGTCGAGAGAATGAAGGAAACTCCAGGCAAACTGCATCAGGCAGCATGGTTAAGAAATCGAAAAATGCTCCTTCCAAATCTCCTGGAAAGGACAAAACCAGTGAAAGCACTAAACTACCTCCTCCTCAGAAGAAAGAAGAGCTGCCGAAAGCAGAGAAGCGCAAATCACAAACTCCTAAAACTGTACAGAGTAAAAAGGTTAGGAAACAACATATAGAGAAATGTATCCAGTAGTTTCATTTGTTTAACCATTGTATAATTTCTGGGTTTTGGAGAGTTTTTTGGTGGGTTTTATTTTTTTAATAAAAAAAAAATCATAGTTAAAAAAAA	Refseq >NM_001088714\|Xenopus laevis ligase III, DNA, ATP-dependent (lig3), nuclear gene encoding mitochondrial protein, mRNA CGTCACTAACAGGCCTACTACCAACTTGGAACTAGCAGCGCCTTTGCGGGAGCTTTACAGATTCGTAACTGTGTGAGTGAGGGAAATTGCAGGTTGCTGTTGGCAGTATGATTCACTTTTAGTGGTCAATGAAAGCAGTTCTGAAACTATTGTCATATCAGACAATAAGGACCTTTGGACAGTTATTTACAAAAGTTCCTTTACAAGTTACTGTTCTTGCCCGTTGGAGCCCGTCGCCTCTCCGCAGTGCTTTGCGCTTTCAATTCTTTTTAGGAGTCACAAATTACTCAAACATGGCAGAACAGCGATACTGTGTGGAGTACGCAAAACGTGGGACTGCTGGCTGTAAGAAATGCAAGGAGAAGATTGGAAAAGGTTTGGTACGCATAGGCAAAATAGTTCCAAACCCTTTCAGTGAGTCTGCTGGCGACATGAAGGAGTGGTATCACATTAAGTGCATGTTTGAGAAACTGGAGAGAGCACGGGCAACTACAAAGAAAATTGATGATCTGACTGATCTGGAAGGTTGGCAGGAACTTCAAGACTGTGATAAAGAGCTAATCAACCAGCATGTCACTGAACTTGCTACAAAAACAGCAGCTACACCTCGAAAAAAGACCCCATCCAAGGGAAACCAATCTATGGCGGCACAAGGAACAACTCCCACTAAGGCACCAGCAACCAGTCCTTCTCCTCTAAAATTTTCGGGATACTCAGCAAAACCCAGTCAATCTCCAAGCCCACCAAGCTCAGGCACTGGCTCCAGTCTTTCCACTGCAAAGTGTGACCCTAAACATAAGGACTGCCTTCTGCGTGAGTTCCGCAAGCTTTGTGCAATGGTTGCGGAACAGCCAAGCTACAATTCCAAAACACAGATCATTCGTGATTTCCTAACTAAGGGAACAAGTGGAGATGGATTTCATGGTGACACATATCTGACAGTAAAGCTGCTATTACCAGGTGTTATTAAGTCAGTGTACAACCTCAATGATAAGCAGATTGTTAAACATTTCAGTCGTATTTTTAATTGTAACCAAGAGGAGATGGTACGGGACCTAGAGCAGGGAGATGTCTCTGAAACTGTGCGCATCTTCTTTGAGGAAAGTAAAAGCTTTCCACCTGCGTCTAAGAGTCTACTGACAATCCATGAGGTTGATGATTTGCTTACTAGACTTTCAAAAATGACTAAAGAAGAAGATCAACAGAATGTCCTGGAGGACATTGCTCGCAGGTGTACCAGTAATGATCTTAAATGCATAATTCGCCTGGTTAAGCATGACTTGAAAATGAACTCTGGAGCCAAACACGTGCTGGATGCTCTAGATCCTAATGCATATGATGCATTTAAAGCTTCACGCAATCTAGGGGATGTAGTAGAGCGTGTTTTACGCAATGAACAGCAGGCTCCAGGAATGAAACGAACTCTTAGTGTCCAGGCTTCATTAATGACTCCAGTTCAGCCTATGCTTGCTGAAGCTTGCAAATCTATAGAGTATGCCATGAAGAAGTGTCCCAATGGTATGTATGCTGAAATAAAATATGATGGTGAAAGAGTCCAAGTACATAAGAATGGAGATCACTTCAGCTACTTCAGTCGCAGTCTCAAGCCAGTGCTTCCTCATAAGGTTGCTCATTTTAAGGATTTTATACCCAAAGCATTTCCAGGAGGAAACAGTATGATTCTGGACGCAGAAGTTCTTCTTATCGATACCAATACGGGCAAGCCACTACCATTTGGCACTTTAGGTGTTCATAAGAAAGCTGCTTTCAAAGATGCCAGTGTGTGCTTGTTTGTTTTTGATTGCATTTATTTCAACGGAGTGAGCTTAATGGATCGGCCACTTAACGAGCGACGAAAGTTTATGCGTGAAAACATGGTTGAAATCCCAAATCACATTATGTTCTCTGAGATGAAACATGTCACAAAAGCTGCTGATCTGGCTGACATGATCACCCGTGTTATCCGAGAGGGATTGGAGGGTCTGGTATTAAAAGATATAAAGAGTAATTATGAGCCAGGAAAACGCCATTGGCTCAAAGTCAAGAAGGATTACTTAAATGAAGGTGCAATGGCAGACACAGCTGACCTGGCAGTTTTGGGCGCTTATTATGGAAAGGGAGCAAATGGTGGTATAATGTCCATCTTTCTCATGGGTTGCTATGATCCTGAAGGCCAGCTTTGGTGCACTGTGACAAAATGCTCAAGTGGTTATGATGATGCTACCTTGCAACGCCTTCAGAAGGAGCTGAACATGGTTAAAATCAGCAAGGATCCATCCAAGATTCCTTCATGGCTTAAAATCAATAAGAACTATTTCCCAGATTTCATTATACAGGATCCGAAGAAAGCTCCCATTTGGGAAATTACTGGTGCAGAGTACTCAAAGGCAGAGGCTCATACAGCTGGTGGGTTATCCATTCGCTTCCCACGCTGCACACGTTTTCGTGATGACAAGGACTGGAAAACCGCCACAACACTCCAACAACTAAAGGAACTTTATCGTCTCTCAAAAGAGAAATCGGACTTTAATATCACTGCCACATCCTCTCAAGATGAGGATGGTTCATCTGAATGCAGTAGTCGAGAGAATGAAGGAAACTCTACTCAAACTTCTTCAGGCAGCTTGGTTAAGACAATAAAAAATGTCCCTTCAAAATCTCCTGCCAAGGGCAAAACCAGTGAAAGTAGTAAACTACCTCCTCAGAAGAAAAAAGAAGAGCCGATGAAAGCAGAGAAGCGCAAATCCCACACTCCTACAACTGTACAGAGTAAAAAGGCTAAGATTTCAGAAACAGGTCATAGTAACGGACACCGCATAGCCCAATCAACTGCAGCTAATAAAACTCTTCTGGACATATTCACTGGTGTAAAGCTGCATATTCCTTCCACACTTGATGACTTTGCCAAACTGCGCCGTTATTTTATCGCCTTTGATGGGGACCTGGTACCAGAATATGATCTTCCTACAGCCACACATGTGATGGGTGATGCACCTGATAGTGACACAGATGCCAAACATGTAACACCACACTGGATATGGGCGTGTATAAGACGCAGGCGATTAGTTAGCTGTGTTGATGAGAATTGTGTGTAAGGTGGCACTGACGGCACAAATTTGTTTACATTTTTACACACCAGGAGAAGGCATCACAGATCAACCATTCTGACTGAATTTTTTTTGTTTAGAATTCACTAGCTAGAATTGCTAGTGATGATGGCTGCTACATTACTAACAAGCAGAGGATATAAGATCTGACAATAATCTCTTACTGTCTGGATACAGATTCTGCATCCAAAGTAGCACTCTTCATTTTTCGATATCACATTGCCATGGGACATCTGAAGCAACATATTCAGCTGTGTTTGTACAGTAGGTTTTTAGCTGAGGTTTTTTACCTCATAAATGCAATCTGGTAGTTTGTGATATTTAACTGCAAATATGATTTAAAAATATCATAGATCATTTCATGAAGCTTAAACGGGACAGCCTGCATTTTTACTCCCAGAAGTGATGATAATAGGATGTGCACAGATTCGGGATCTGAACAGATTATTTTTCTTGTCTAAGCATGCTGTGGGTAATGCTTGCCTGCAGCAGTTAAAAGTCCATGAATGGTTTGCCAGTCCTACAGAAACATGGTAAATCCACTGGGATCCACAAATCCTAAATCGTTTTACCTATCTAGTGTTAATTGTATAAATCGGTAATACAGGAGAAATGTATTGTTTATATTGGTGGGAATCACAAAAAATGGTGTTAAATGCAGGATTACTTAAAATCAGGTTGTAAAATTCTTTCAGTGTATGATGCTTCTGTGATGTCAGATATTGGGGGACCATTCCAGGCATATCCAGAATTCTTTAGTTTGCTTAAAATGCTAGATCCACAATTAAGGTTGGCTACTGTAAGAAGTGGATTGTAGCAGTGTTTACATCTCATTTTCCTGATCGGGAAAGCCGTTGCTACAAGTGATCAGCATAAGAATGCTTGTCCAACAATACAATTGGTGCTTTGATAATTAAGTACTTGACTGTGTCTCATATACCACACCACACGTTACAGTCCCTTTGTTATAATATACATTTTCATGATGTCTTGTAACCAAAGGTTTTTATAGGAGTTTTAGTTTTTAAACTGGAGGTCATCTGCAGCTGAATTCAGATGTTCTGTACAATTGTGTATGTTGATTTGTCTCCCTGTCCAAATGACTATCTTTCCAAAAAAGATTGCTCGTTTCAATACATGCATGTAGAGCTGAATCGTCTGATATACAGGTAGAAACAATAGAATTTTACCTGTATCTGACGATTCAGCAATAATGGCTGATGTTTGGGTGCCTTCAAAAGCGCCCAATCAAAATTTTCTGGCCAGCCCCAATTGACGAGCCGACCAATATCCAAGTCTTCTGCCTATATCTGCCGGCTCGTCTTCCACCATACACGCACCGAATATCTTACAAAATTTTGTTTTGTACAATATCAGTGCATTTACAGCCACCTTAACAGTGTGGAACATTAATTAAAGCATAGTCTTAACTGTGCCAACTATTATTTCTAGCTTAAGTACACAAGTTCTCTTTTAAGGAATTTCCTACCATTGAAGGAAAAAAGTGGTTTAAAAATGTAGGTCTGTTTGAAATAAACAGAAAACATATTTCAATGTTTTTGTCAACAAGGTTTGTTTGCATAAACTATTATGAATTCTTATTTTTCTGTACAGGAACTATAAATCTATGACCAGTCATTTTGGTACTAAG
Protein		Refseq >NP_001016351\|DNA ligase (ATP) 3 [Xenopus (Silurana) tropicalis] MRAFLRLLAYQTKRTLGQSLTKVPLRVIFHACWSQSPLHSALHFQFFLRVTHFSNMAEQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLERARATTKKIDDLTELEGWQELQDCDKNLISQHVTELATKTAATPRKKTPSKEKQSPAVQGTTSTTAPAASPSLKFSGFSAKPSQSSSPPSSSTGSSLSTAKCDPKHKDCLLREFRKLCAMVAEQPSYNSKTQIIRDFLTKGTSGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKHFSRIFNCNQEEMVRDLEQGDVSETVRIFFEESKCFAPASKSLLTIHEVDDLLTKLSKMTKEEDQQNVLEDIAHRCTSNDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYDAFKASRNLGDVVERVLRNEQQAPGMKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPKAFPGGNSMILDAEVLLIDTNTGKPLPFGTLGVHKKAAFKDANVCLFVFDCIYFNGVSLMDRPLSERRKFMRDNMVEIPNHILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKSNYEPGKRHWLKVKKDYLNEGAMADTADLAVLGAYYGKGANGGIMSIFLMGCYDPESQKWCTVTKCSSGYDDATLQRLQKELNMVKISKDPSKIPSWLKINKNYFPDFIIHDPKKAPIWEITGAEYSKAEAHTAAGLSIRFPRCTRFRDDKDWKTATTLQQLKELYRLSKEKSDFNITATSSQDEDGSSESSSRENEGNSRQTASGSMVKKSKNAPSKSPGKDKTSESTKLPPPQKKEELPKAEKRKSQTPKTVQSKKVRKQHIEKCIQ	Refseq >NP_001082183\|ligase III, DNA, ATP-dependent [Xenopus laevis] MKAVLKLLSYQTIRTFGQLFTKVPLQVTVLARWSPSPLRSALRFQFFLGVTNYSNMAEQRYCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLERARATTKKIDDLTDLEGWQELQDCDKELINQHVTELATKTAATPRKKTPSKGNQSMAAQGTTPTKAPATSPSPLKFSGYSAKPSQSPSPPSSGTGSSLSTAKCDPKHKDCLLREFRKLCAMVAEQPSYNSKTQIIRDFLTKGTSGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKHFSRIFNCNQEEMVRDLEQGDVSETVRIFFEESKSFPPASKSLLTIHEVDDLLTRLSKMTKEEDQQNVLEDIARRCTSNDLKCIIRLVKHDLKMNSGAKHVLDALDPNAYDAFKASRNLGDVVERVLRNEQQAPGMKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPKAFPGGNSMILDAEVLLIDTNTGKPLPFGTLGVHKKAAFKDASVCLFVFDCIYFNGVSLMDRPLNERRKFMRENMVEIPNHIMFSEMKHVTKAADLADMITRVIREGLEGLVLKDIKSNYEPGKRHWLKVKKDYLNEGAMADTADLAVLGAYYGKGANGGIMSIFLMGCYDPEGQLWCTVTKCSSGYDDATLQRLQKELNMVKISKDPSKIPSWLKINKNYFPDFIIQDPKKAPIWEITGAEYSKAEAHTAGGLSIRFPRCTRFRDDKDWKTATTLQQLKELYRLSKEKSDFNITATSSQDEDGSSECSSRENEGNSTQTSSGSLVKTIKNVPSKSPAKGKTSESSKLPPQKKKEEPMKAEKRKSHTPTTVQSKKAKISETGHSNGHRIAQSTAANKTLLDIFTGVKLHIPSTLDDFAKLRRYFIAFDGDLVPEYDLPTATHVMGDAPDSDTDAKHVTPHWIWACIRRRRLVSCVDENCV

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		[+] Str.59996	Xl.16012 [+] Xl.62423
Unigene EST Profile			EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	LIG3
mouse		MGI	Lig3	All(3) Targeted, knock Out(1) Targeted, other(2)
zebrafish		ZFIN	lig3

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:		ATP binding DNA binding DNA ligase (ATP) activity More[+] peroxidase activity
Biological:		DNA recombination DNA repair DNA replication More[+] response to oxidative stress
Cellular Component:		intracellular nucleus
EC:		DNA ligase (ATP)
KOG:		[L] ATP-dependent DNA ligase III

Reagents		tropicalis	laevis
Clones			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0		Str.26611.1.S1_at [+] Str.26611.2.S1_s_at	Xl.16012.2.S1_a_at [+] Xl.16012.1.S1_at
Affymetrix 2.0			Xl2.16012.3.S1_a_at [+] Xl2.16012.1.S1_a_at Xl2.40688.1.S1_at Xl2.40688.1.S1_x_at Xl2.46968.1.A1_at

Symbol legend[+]