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Summary Expression Gene Literature (2) GO Terms (10) Nucleotides (91) Proteins (31) Interactants (240) Wiki
XB-GENEPAGE- 5842343

Gene Symbol: setd1b

Gene Name: SET domain containing 1B

Synonyms:
Add Xenopus synonyms , Nomenclature history

Gene Function: histone methyltransferase complex component

Protein Function:
Histone methyltransferase that specifically methylates 'Lys-4' of histone H3, when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methyl...[+]


Interactants: YYY

OMIM Disease Associations:
 
Xenbase Gene ID XB-GENE-5842344 XB-GENE-17346666 XB-GENE-5842376
Gene Symbol setd1b setd1b.L setd1b.S
Chromosome Chr01 chr1L chr1S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 8.0 JBrowse 8.0 GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0
Entrez Gene
Entrez Gene
Entrez Gene
mRNA Refseq Refseq
Protein Refseq Swiss-Prot TrEMBL Refseq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v8.0 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.52478 Xl.41806 [+]
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 0 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine setd1b setd1b.L setd1b.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards SETD1B OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Setd1b MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN ZFIN setd1ba setd1bb ZFIN Ensembl
chicken
GEISHA SETD1B Ensembl
fruit fly
worm
WORMBASE
Publications
First: The MLL/Setd1b methyltransferase is required for the Spemann''s organizer gene activation in Xenopus. [Mech Dev 2016]
Most recent: Genome-wide identification of thyroid hormone receptor targets in the remodeling intestine during Xenopus tropicalis metamorphosis. [Sci Rep 2017]
View All Papers
Functional Ontologies tropicalis laevis.L laevis.S
GO 7 terms 4 terms 10 terms
EC glucan 1,4-a-glucosidase
PANTHER setd1b
KEGG Pathways K11422 K11422 K11422
KOG [BK] Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience
ORF setd1b ORF1
Affymetrix 1.0 Str.39994.1.S1_s_at [+]
Affymetrix 2.0 Xl2.41806.1.S1_at

Symbol legend[+]

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