suv39h2 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

My Xenbase
[Login] [Register]

Search

Summary

Gene Literature (0)

Nucleotides (163)

Interactants (0)

XB-GENEPAGE-852674

Gene Symbol: suv39h2 Gene Name: suppressor of variegation 3-9 homolog 2 Synonyms: kmt1b Add Xenopus synonyms Gene Function: histone methyltransferase Interactants:

XB-GENE-852675

XB-GENE-866435

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016508\|Xenopus (Silurana) tropicalis suppressor of variegation 3-9 homolog 2 (suv39h2), mRNA TGGCGGTACAAGATGGCTGCAGCGCGTGGAGCTTGGTGTGTGCCATGCCTTGCTTCCATCGAAACATTGCAGGAGTTGTGCAGGAAAGAAATGCTCATTTGTACAAACATTGGAATTACCAGGAAAAATTTAAATAATTATGAAGTAGAATATCTATGTGACTACAGGATTGAAAAGGGTGTAGAAAAATTCTTTGTGAAGTGGAAGGGATGGCCAGAGTCTTGTAATACTTGGGAGCCTACAAGAAACTTGAAATGCCCAACGCTTTTAAAACAGTTTTACAGTGACCTTTACAATTATTTCTGTGCACTTAAACCAAATAAAAAAGGGTTCCTTAAAAACAGCATTAAGTCTTTGGACCCTTCTCTTTCTGACTATATAGTCAAAAAGGCTAAACAGAGGATTGCTTTACGGCGCTGGGAAGAAGAGCTGAACAGGAAAAAAACCCATAGTGGTACTCTTTTTGTTGAAAATACTGTCGATTTAGAGGGTCCTCCTATGGACTTTTACTATATCAATGATTACAAGGCCTCTCCTGGAGTTAACACATTGGGTGAAGCCATTGTTGGCTGTGACTGCTCGGATTGCTTTAAAGGCAAATGTTGTCCCACAGAAGCAGGAGTCCTCTTTGCATATAATGAACACAGGCAAATAAAAATCCCACCAGGAAGACCAATTTATGAATGCAATTCAAGATGCAAATGTGGTCCGGATTGTCCTAACAGGGTGGTGCAAAAGGGGCCACCCTATTCCTTATGCATCTTTAGGACAGACAATGGTCGTGGCTGGGGAGTAAAGACACTCCAAAAAATAAAGAAAAATAGTTTTGTGATGGAGTATGTTGGCGAGGTAATAACAAGTGAGGAGGCAGAGCGAAGGGGTCAACAGTATGACAGCAGAGGGATCACATATCTGTTTGATCTAGACTATGAGGCAGATGAGTTTACAGTTGATGCAGCTCGATATGGGAACGTCTCGCATTTTGTGAATCACAGTTGTGATCCAAACCTTCAGGTATTTAATGTCTTCATTGATAATCTTGATGTACGTCTTCCACGTATTGCGTTGTTTTCAACCAGAAACATCAAGGCCGGAGAAGAACTTACATTTGATTACCAAATGAAAGGTTCTGGGGACTTTAGCACAGATTCTATTGATATGAGCCCTGCCAAGAAAAGAGTGAGGATAGCTTGCAAATGTGGAGCTGCCACCTGCCGTGGATACCTTAATTAAATGAGTTTTTCTGTTTTGCCCAATTAAATAATTTGCTATGATGGTTTTTATTTTTAAATATCTGAAATGCAATGAATGCTTAGTTTGTGGGTTTTTACTTTACAAAATAAATTTAAATGCCTATTTTT	Refseq >NM_001097868\|Xenopus laevis suppressor of variegation 3-9 homolog 2 (suv39h2), mRNA CGGCGGTACAAGATGGCTGCAGCGCGTGGAGCTTGGTGTGTACCATGCCTTGCTTCCATTGAAACGTTGCAGGAGTTATGCAGAAAAGAAATGCTCACTTGTACAAACATTGGAATTACCAGGAAAAATCTAAATAATTATGAAGTCGAATATCTATGTGACTACAGGATTGAAAAGGGTGTGGAAAAATTCCTTGTGAAGTGGAAGGGATGGCCAGAGTCTTGTAATTCATGGGAGCCTACAAAAAACTTGAAATGTCCAACACTTCTAAAACAGTTTTACAGCGACCTTTATAAGTATTTATATGCACTTAAACCAAATAAAAAAGGGGTCATAAAAAATAATATTAAGTCTTTGGACCCTTCTCTTTCTGACTATATAGTCAAAAAGGCTAAACAAAGGATTGCTCTACGGCGCTGGGAAGAAGAGCTGAACAGGAAAAAATCCCATAGTGGTACACTTTTTGTTGAAAATGCTGTTGATTTAGAGGGTCCTCCTATAGACTTTTACTATATCAATGATTATAAGGCCTCTCCTGGAGTTAACACATTGGGTGAAGCCATTGTTGGCTGTGACTGCTCGGACTGCTTTAACGGCAAATGTTGTCCCACAGAAGCAGGAGTCCTTTTTGCATATAATGAACACAAACAGTTAAAAATCCCACCAGGAAGACCAATTTTTGAATGCAATTCAAGATGCAAATGTGGTCCGGATTGTCCTAACAGGGTGGTGCAAAAGGGGCCACCCTATTCTTTATGCATCTTTAGGACAGACAATGGCCGAGGTTGGGGTGTGAAGACACTCCAAAAAATAAAGAAAAATAGTTTTGTGATGGAATATGTTGGTGAGGTAATAACAAGTGAGGAGGCAGAGAGACGGGGCCAACAGTATGACAGCAAAGGAATCACATATCTATTTGATTTAGACTATGAAGCAGATGAGTTTACAGTGGATGCAGCTCGATATGGGAACGTCTCACATTTTGTGAATCACAGTTGTGATCCAAATCTTCAGGTTTTTAATGTCTTCATTGATAACCTTGATGTACGTCTTCCGCGTATAGCGTTATTTTCAACAAGGAATATCAAGGCCGGAGAAGAACTTACATTTGATTACCAAATGAAAGGTTATGGTGACCTCAGTACAGATTCTATTGATATGAGCCCTGCCAAGAAAAGAGGGAGGATAGCCTGCAAATGTGGAGCTGCCACCTGTCGTGGATACCTTAACTAAATATCTTTCTGCTTCACCCCCATTAAATGTTTGCTATGCTGTTTTTATTTTATTTGAATTGCAATGATTGCTTAGTTTATGGGTTTTTACTTTCCAAAATAAATTTTAATGGCAATTTTTAAACCCCTTTACTCTCAGATGTTAGTTGTAAATAAAATATGAATGTATCAATTGCAAAAATCAGTTTAGGGATTGTTCTAAATCCTTAATGTGTAAAAAGTTTTGAGTTTGACACCAGGAGATCACAAGAATATAAGGGTTTGGATGCAGCAAAATATCTTTCCCTGTGATGCTTGGTGCAGTATCTGAACCCAGTTTTGCTTATTGTGCTGCAAAAAAAGTGTGGACAAAAGATACATTTTCAACAACTGTCTGACCAAGGGCAATAGCAAATGGTAAATTTTTGGACATATTGACTTGCTATCAAAATACCTTTTTATATTTATTTTTACTCCCTTCATTTTACCTCGTAATGCCTTTATGTTATGAAAATGTTGCAATGTTTCCAAGGCTAAAATTAATTGAAAATGGACTGGTGCTTTCATGAATGTTACATTTGTAGCAAGAATACAGCAGCAGGCACAACTCCCAACATTGCTTGTTCTGCCTTTACCCTTATTTGCTCATTGTCTAACGAGTTGTAGTAGTAGATGATGAGAAATAGGTTATTTTTTATGGCCATATAATTGATTTTGCTGGACAAAACCATGAGTCTACTTGAAGGAAGCTACTCATGTTCTTGTCTGACATAAGCCTTTTTTGTGGTTTGGCATATCCCAAGTGAACTGCATATCTGTTTGGTTGTAGAAAATACACATGAAAGCGGTTTAAACATTAATTTAAAAGAATCGGCCCTTGTGAATTGCTGCTAGAGCAAGGTTGTGCTATATTTGGTAGGATAATACTATAGTTTGTAAGTAAGTGGCAGCTGTAACATTATGATTAGCATTTATTTGATCAACATATTTTAGTTTTCTTCTCTCCCCTCAAGCACTCCTTTCTGTGTACCCATCGAAATGACTCTTACATTCCCCTATATCGGGGCTGTGCAGTTGGAGGCCTTGGGGGTTGGATGAACATGTCCATGGCTTTTGTTCTGCTTCAGTGCTCTGTTGACCTCTTTGGATGGCATCAGTTTATCATCTGGTCCCCAGAAGTGCAGTATAGTAAATCATTTCTAAAATGCCTAGAAAAAACAATTACCAATCTCATGTCAATTACTTTAAAGTAAATAAACAAAATATTGCACGATAAAACATTGATATTTCTTCTGTATTGTCGATTTCTAATCCTTCCCTGGTGATTAAATTTTAATACATTTCTTGAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016508\|histone-lysine N-methyltransferase SUV39H2 [Xenopus (Silurana) tropicalis] MAAARGAWCVPCLASIETLQELCRKEMLICTNIGITRKNLNNYEVEYLCDYRIEKGVEKFFVKWKGWPESCNTWEPTRNLKCPTLLKQFYSDLYNYFCALKPNKKGFLKNSIKSLDPSLSDYIVKKAKQRIALRRWEEELNRKKTHSGTLFVENTVDLEGPPMDFYYINDYKASPGVNTLGEAIVGCDCSDCFKGKCCPTEAGVLFAYNEHRQIKIPPGRPIYECNSRCKCGPDCPNRVVQKGPPYSLCIFRTDNGRGWGVKTLQKIKKNSFVMEYVGEVITSEEAERRGQQYDSRGITYLFDLDYEADEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDVRLPRIALFSTRNIKAGEELTFDYQMKGSGDFSTDSIDMSPAKKRVRIACKCGAATCRGYLN UniProtKB	Refseq >NP_001091337\|suppressor of variegation 3-9 homolog 2 [Xenopus laevis] MAAARGAWCVPCLASIETLQELCRKEMLTCTNIGITRKNLNNYEVEYLCDYRIEKGVEKFLVKWKGWPESCNSWEPTKNLKCPTLLKQFYSDLYKYLYALKPNKKGVIKNNIKSLDPSLSDYIVKKAKQRIALRRWEEELNRKKSHSGTLFVENAVDLEGPPIDFYYINDYKASPGVNTLGEAIVGCDCSDCFNGKCCPTEAGVLFAYNEHKQLKIPPGRPIFECNSRCKCGPDCPNRVVQKGPPYSLCIFRTDNGRGWGVKTLQKIKKNSFVMEYVGEVITSEEAERRGQQYDSKGITYLFDLDYEADEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDVRLPRIALFSTRNIKAGEELTFDYQMKGYGDLSTDSIDMSPAKKRGRIACKCGAATCRGYLN

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.423 [+] Str.4228 Str.44556	Xl.70352 [+] Xl.73749
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		2 expression image(s) for tropicalis and laevis

Phenotype		tropicalis	laevis
Smith Morpholino Screen		tegg055l20

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SUV39H2
mouse		MGI	Suv39h2	All(2) Targeted, other(1) Targeted, knock Out(1)
zebrafish

Publications
First:
Most recent:
		View All Papers

Functional Ontologies
GO: Molecular:		chromatin binding histone-lysine N-methyltransferase activity zinc ion binding
Biological:		chromatin assembly or disassembly chromatin modification
Cellular Component:		chromatin nucleus
EC:		histone-lysine N-methyltransferase
KOG:		[BK] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.423.1.S1_at [+] Str.16857.1.A1_at Str.44556.1.A1_at Str.45076.1.A1_at Str.4228.1.A1_at	Xl.11673.1.A1_at
Affymetrix 2.0			Xl2.11673.1.S1_at [+] Xl2.19244.2.S1_at Xl2.19244.1.S1_at Xl2.19244.3.S1_at

Symbol legend[+]