Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Gene Literature (3) GO Terms (12) Nucleotides (223) Proteins (70) Interactants (396) Wiki
XB-GENEPAGE-854113
Gene Symbol:
pdlim5

Gene Name:
PDZ and LIM domain 5

Synonyms:
( Add synonyms , Nomenclature history )

Gene Function:
zinc finger protein

Protein Function :


InterPro :
DUF4749 , PDZ , Znf LIM , PDZ sf [+]

Interactants:
Loading ...

Diseases: 


External Links:
 
Xenbase Gene ID XB-GENE-854114 XB-GENE-866538 XB-GENE-17330696
Gene Symbol pdlim5 pdlim5.L pdlim5.S
Chromosome Chr1 chr1L chr1S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.1 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 548530
100101292
447619
mRNA NCBI Nucleotide NCBI Nucleotide NCBI Nucleotide
Protein NCBI Protein RefSeq  More.. NCBI Protein RefSeq  More.. NCBI Protein RefSeq  More..
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics X. tropicalis X. laevis.L X. laevis.S
Embryonic Protein Expression Stage profile: Stage profile:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine pdlim5 pdlim5.L pdlim5.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards PDLIM5 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Pdlim5 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Pdlim5 Ensembl
zebrafish
ZFIN, AGR ZFIN, AGR pdlim5a pdlim5b ZFIN Ensembl
chicken
GEISHA PDLIM5 Ensembl
fruit fly
worm
Publications
First Microarray-based identification of VegT targets in Xenopus., Mech Dev 2005                                            
Most Recent Genome-wide identification of thyroid hormone receptor targets in the remodeling intestine during Xenopus tropicalis metamorphosis., Sci Rep 2017              
All View All Papers 1 paper(s) referencing morpholinos
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 12 terms 2 terms 1 terms
PANTHER pdlim5
KEGG Pathways K19867 K19867
KOG [TZ] Adaptor protein Enigma and related PDZ-LIM proteins
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks pdlim5
ORFs MGC85532 ORF1
Clones Horizon Source BioScience Horizon Source BioScience Horizon
Plasmids Addgene Addgene

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info