whsc1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (0)

Nucleotides (134)

Interactants (0)

XB-GENEPAGE-988823

Gene Symbol: whsc1 Gene Name: Wolf-Hirschhorn syndrome candidate 1 Add Xenopus synonyms Gene Function: transcription factor Interactants:

XB-GENE-988824

XB-GENE-988828

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		NCBI Nucleotide >BC161082\|Xenopus tropicalis Wolf-Hirschhorn syndrome candidate 1, mRNA (cDNA clone IMAGE:7688202), partial cds GCTTCGTTTGCGGTGTGCCTGTCTCTCCATTGATCGCCAGCCAGGAGCAGCTTTTTTTCAGCCTAAACGCGCGCGTCAGGATGCGACAAACAGTAGTGTGAAATTTGTGCGAACTACTTACTTTTCTCTACATTACCTGAAACCACCTCAGCACAATGAAACAAGTACCTCATATCCTCGGAAGTCCAGCTGTGAAGCCATCCAATCCAGAAGTGAGTCGGGAGTGCTCTGTGTTGCTTGGGAGAGCCCAAATCTCAGCCTCTCTCCAAGAGGGTGTAATACAGAAACTCAATGGCCATGATTCCCTGCCTTTCATTCCAACGGAGAAGCTGAAGGACCTCACTTCCCGTGTGTTTAATGGAGAGTCTGGAGCCCAGGAAGCCAAAGTGCGCTTTGAGGCTCAAGAGGTTCAAGGTATTGAGACGCCACCCAGCACTACTCCTACTAAAAATGGATCTCCTGAAATAAAGCTGAAAATCACTAAGACCTACATGAATGGAAAGCCCTTGTTTGAATCTTCTATATGTGGTGATAGAGGCGAGGAAGAGCCTCAACCGGAGCAAAAGAAAAGTAAGAGAGGCAGGAAACGAAAAATTATCACGTCTGAAGCCAATGAAAAGTCGAGCAGTGAGATGCCCTCCCACTCAGAATCTTCCAAAATGAAGCCTGTATCAGAATCAGAATTCCTAGAGCACAAGAATAAAGAGGACTTTTCCTTGAAGTACTCTGTTGGAGATGTAGTGTGGTCCAAGGTCTCTGGTTATCCATGGTGGCCATGTATGGTGACATCTGACCCTGTGCTGTATAGCCACACAAAAGTAAAGGGGCAAAAAAAGAATGTCAGGCAATATCATGTACAGTTTTTTGGTAATGCTCCTGAGAGAGCTTGGATATCTGAGAAGAGTATGGTGCCCTTCAAAGGAGAAAATGAATACGACCACTTGTGCCAGGAAAGTGCAAAACAGGCACCCACCAAAGCAGAAAAAACTAAGCTCTTAAAACCCATAACAGGCAAAATCCGGGCTCAGTGGGACATAGGTATAGAACAGGCCAAAGAAGGCATATTGATGACTCCTGAAGAAAGGAAAGAAAAGTTTACTTTTATTTACATAAAAGACCGTCCTCAACTCAATCCCAGAGTGGCTTCTGAAGTGGGTGTCCCAGTGGAGTCCTCAGAGAAAAGTACAGAAAGCCCACAAAAAGAAGGCTCTTCCTCCTACAAGAGGAGACGTGTATCCAGAACACCGGCTGCTAGTAAAGAGGTTGATCCTGCTGACAAAACCACTACTGCTAAAGGACCGGAGAACTCATCAGACCCTAAAGGGATGACCTCACCTGCAAGTAAAAAAAGGTCTGGGGCATATACCCCTAGGAGCAGGAAGGGCGATGCTGTGAACCAGTTTCTTGTATTTTGTCAGAAGCACAAAGATGAGGTAATAAATGAACACCCAGATGCTTCCGATGAAGAGATTGAAGAATTGCTGGAATCCCAGTGGAATATGCTCAGCAATAAACAAAAAGCTCGCTATAACACAAAGTTTGCCATTCTCACCTCTCCCAAATCAGAAGAAGACTCTGGTAGCTTGCATGGACATAAAAGAAACCACTTAAAGACAACGCACAATCAAACCGAAGATTCAGAAATCCAAGAATCTCCACGCAAGCGGCTCCGGATGCATAATCGAAAGCAAAGGGAAACCTGCAAACCTCCAAAAGCCAGAGCATCTGCCCCTGTAAAGAACTCTCCAGCAATGTTCAGCCTGTCTGATGCGTGTAAGCCTTTGAAGAAGAGAAACAGGAGTTCTACTCTTGGTTCAGTGGCCCTTCCTGTGAGCAAAAGTTCTTCTCCTGCTTCACTGACTGAGAATGAGGTCTCTGATAGTCAGGGGGATGAGAGATCAGAGTCCCCTTCAGAGAGCGCTGATGAGTCTCAAGCAGAAATATCAATGCTTCACAGGAAGTCCGAGAGAGGAGCCATGAAAAAAGAGCTTGTGTGCCAGGTCTGTGAGAAGGTCGGAGACCTTATGTTGTGTGAAGGAGTGTGTTGTTCTGCTTTCCATTTGTCCTGCATTGGCCTTTCCACACGACCGGCTGGGAAATATCTGTGCAAGGAATGCACATCAGGTGCCCGTTCGTGTTTTTTGTGTAAGGAGAGTAACAGAGATGTGAAGCGGTGTATTGTGCCCCACTGTGGCAAATTCTACCATGAGTCTTGTTTAAGAAAGTATCCACTTGCTGTGTTTGAGAGCAGAGGCTTTCGTTGTCCCCTACACCGCTGTGCTACCTGTTACTTCTCAAACCCTTCCAACCCTAGAGCATCTAAAGGCAAAATGGTTCGATGTGTTCGATGTCCTCTAGCTTATCATGGAGCGGAATCCTGTATTGTTGCTGGATGTACAGCGTTAACTTCTACCAGCATCATCTGTTCTTCTCATTTTGCTGCTAACAAAGCAAAGAGCCATCATGCGCACATCAATGTTAGCTGGTGTTTTGTGTGCTCCAATGGGGGAAGCCTGCTATGCTGTGAGTCGTGTCCAGCAGCCTTTCACCCTGATTGCTTGAATATCGAAATGCCTGATGGCAGCTGGTTTTGCAATGATTGCAGATTAGGGAAGAAGCCGCGATTCAATGACATCATTTGGGTGAAGCTGGGGAACTACAGGTGGTGGCCTGCAGAAGTGTGTCATCCGAAGAATGTGCCTCCAAATATCCAGAAAATGAAGCACGCAATTGGTGAATTCCCTGTTTTCTTTTTTGGGTCCAAGGATTATTACTGGACCCACCAAGCTCGAGTCTTTCCATATATGGAAGGAGACAGGGGTAGCAAACACCATGGAGGCAAAAGCATTGGCAAAGTGTTCAAAAATGCTCTGCAAGAAGCCGAAACCCGATTCTGTGAGATAATGCGCCAGCGGGAAGCAAAAGTTACTCAGGAAAATGAAAAAAAGCCTCCCCCATATAAACATATAAAGGTGAATAAGCCTTATGGAAAAGTACAGGTTTACACGGCTGATATATCTGAAATTCCCAAATGCAATTGCAAACCTTCCAGTGAAAAACCCTGTGGCTTTGACTCTGAATGTTTAAACCGAATGCTGATGTATGAATGCCACCCTCAAGTGTGCCCTGCTGGAGACCGGTGTCAGAATCAGTGTTTCAACAAGCGCCAGTATCCAGAAACCAAGATCATCAAAACTGAAGGCAAAGGATGGGGGCTCATTGCAACAAAAAAAAAAAAAAA	Refseq >NM_001091470\|Xenopus laevis Wolf-Hirschhorn syndrome candidate 1 (whsc1), mRNA CGCGCGCGTCAGGATGCGACAAACAGTAGTGTGAAATTTGTGAGAACTACTTGCTTTTCTCTAAATTACCTGGAACCACCTCGGCACAATGAAACAAGTACCTCATATCCTCGGAAGTCCAGCTGTGAAGCCATCCAATCCAGAAGTGAGCCGAGAGTGTTCTGTGTTGCTTGGAAGAGCTCAGATCTCAGCTTCCCTCCAAGAGGGGGTTATACAGAAGATCAATGGCCACGATTCCCTGCCCTTCATTCCAACTGAGAAGTTAAAGGACCTCACCTCCCGCGTGTTCAACGGAGAGTCTGGAGCTCAGGAAGCCAAAGTGCGCATTGAGGCGCAAGAGGTTCAAGGTATTGAAACGCCACCCAGCACTACTCCTACTAAAAACGGATCTCCCGAAATAAAGCTGAAAATCACTAAGACCTACATGAATGGAAAGCCCTTGTTTGAGTCTTCAATATGTGGGGACAGAGGGGAGGAAGAGTCTCAACCTGAGGCAAAGGAAAAGAAAAAGAGAGGAAGGAAAAGAAAAATTATCACATCTGAAGCCAATGAGAAGTCGAGCCAAGAGATGCCAGCTGACTCGGAATCTTCCAAAATGGAGTCTGTATCTGAATCGGAGTTCCCAGAGCACAAGACTAAAGAGGACATATTATTAAAATACTCTGTTGGAGATGTTGTATGGTCCAAGGTCTCTGGTTATCCATGGTGGCCGTGTATGGTGACATCTGACCCTGTGTTGTATAGCCACACAAAAGTAAAGGGGCAAAAAAAGAACGTCAGGCAATATCATGTACAGTTTTTTGGTAACGCGCCTGAGCGAGCTTGGATATCCGAAAAGAGCATGGTGCCCTTCAAAGGAGAAAATGAATACGATCACTTGTGCCAGGAAAGTGCAAAACAGGCATCCACCAAAGCAGAAAAAACTAAGCTTTTAAAACCCATAACAGGCAAAATCCGGGTTCAGTGGGACATCGGTATAGAGCAGGCCAAAGAAGCCGTATTGATGACTCCCGAAGAAAGGAAAGAAAAGTTTACTTTTATTTACATAAAAGACCGTCCTCAACTCAATCCCAAAGTGGCTGCTGAAGTGGGTATCCCAGTGGAGACCCCAGAGAAGAGTATGGAAAGCCCCAAAAAAGAAGGGGTTTCGTCGTACAAGAGAAGACGAGTGTCCAGAACCCCAGCTGCTAGTGAAGAAGTTGATCCTGCTGATAAAACCACTACTGCAAAAGGACCTGAGAACTCCTCAGACCTTAAATTTGGGATGGCTTCGCCTGCAAGTAAAAAAAGGTCTGGCGCATATACCCCTAGGAGCAGGAAGGGAGATGCCATGAACCAGTTTCTTGTATTTTGTCAGAAGCACAAAGATGAGGTAATAAACGAACACCCAGACGCATCTGATGAAGAGATTGAAGAATTGCTTGAATCCCAGTGGAATATGCTCAGCAATAAACAAAAAGCTCGCTATAATACAAAGTTTGCCATTCTCACCTCTCCCAAATCAGAAGAAGACTCTGGTAAACATGAAAACGCACTGTCTAAGGGATTTTAATCTGTATCTCGGTTGTTTTAAAGGAAAAAAAGATCAACTGTGTTTCTACTAACCCAAAAAAAAAAAAAAAAAA
Protein		NCBI Protein >AAI61082\|whsc1 protein [Xenopus (Silurana) tropicalis] MKQVPHILGSPAVKPSNPEVSRECSVLLGRAQISASLQEGVIQKLNGHDSLPFIPTEKLKDLTSRVFNGESGAQEAKVRFEAQEVQGIETPPSTTPTKNGSPEIKLKITKTYMNGKPLFESSICGDRGEEEPQPEQKKSKRGRKRKIITSEANEKSSSEMPSHSESSKMKPVSESEFLEHKNKEDFSLKYSVGDVVWSKVSGYPWWPCMVTSDPVLYSHTKVKGQKKNVRQYHVQFFGNAPERAWISEKSMVPFKGENEYDHLCQESAKQAPTKAEKTKLLKPITGKIRAQWDIGIEQAKEGILMTPEERKEKFTFIYIKDRPQLNPRVASEVGVPVESSEKSTESPQKEGSSSYKRRRVSRTPAASKEVDPADKTTTAKGPENSSDPKGMTSPASKKRSGAYTPRSRKGDAVNQFLVFCQKHKDEVINEHPDASDEEIEELLESQWNMLSNKQKARYNTKFAILTSPKSEEDSGSLHGHKRNHLKTTHNQTEDSEIQESPRKRLRMHNRKQRETCKPPKARASAPVKNSPAMFSLSDACKPLKKRNRSSTLGSVALPVSKSSSPASLTENEVSDSQGDERSESPSESADESQAEISMLHRKSERGAMKKELVCQVCEKVGDLMLCEGVCCSAFHLSCIGLSTRPAGKYLCKECTSGARSCFLCKESNRDVKRCIVPHCGKFYHESCLRKYPLAVFESRGFRCPLHRCATCYFSNPSNPRASKGKMVRCVRCPLAYHGAESCIVAGCTALTSTSIICSSHFAANKAKSHHAHINVSWCFVCSNGGSLLCCESCPAAFHPDCLNIEMPDGSWFCNDCRLGKKPRFNDIIWVKLGNYRWWPAEVCHPKNVPPNIQKMKHAIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGSKHHGGKSIGKVFKNALQEAETRFCEIMRQREAKVTQENEKKPPPYKHIKVNKPYGKVQVYTADISEIPKCNCKPSSEKPCGFDSECLNRMLMYECHPQVCPAGDRCQNQCFNKRQYPETKIIKTEGKGWGLIATKKKK	Refseq >NP_001084939\|Wolf-Hirschhorn syndrome candidate 1 [Xenopus laevis] MKQVPHILGSPAVKPSNPEVSRECSVLLGRAQISASLQEGVIQKINGHDSLPFIPTEKLKDLTSRVFNGESGAQEAKVRIEAQEVQGIETPPSTTPTKNGSPEIKLKITKTYMNGKPLFESSICGDRGEEESQPEAKEKKKRGRKRKIITSEANEKSSQEMPADSESSKMESVSESEFPEHKTKEDILLKYSVGDVVWSKVSGYPWWPCMVTSDPVLYSHTKVKGQKKNVRQYHVQFFGNAPERAWISEKSMVPFKGENEYDHLCQESAKQASTKAEKTKLLKPITGKIRVQWDIGIEQAKEAVLMTPEERKEKFTFIYIKDRPQLNPKVAAEVGIPVETPEKSMESPKKEGVSSYKRRRVSRTPAASEEVDPADKTTTAKGPENSSDLKFGMASPASKKRSGAYTPRSRKGDAMNQFLVFCQKHKDEVINEHPDASDEEIEELLESQWNMLSNKQKARYNTKFAILTSPKSEEDSGKHENALSKGF

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.51297 [+] Str.32151	Xl.21216 [+] Xl.71062
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	WHSC1	OMIM:194190
mouse		MGI	Whsc1	All(1) Targeted, other(1)
zebrafish			whsc1

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:		DNA binding ubiquitin-protein ligase activity zinc ion binding
Biological:		protein ubiquitination regulation of transcription, DNA-dependent
Cellular Component:		ubiquitin ligase complex
EC:
KOG:		[K] Transcription factor NSD1 and related SET domain proteins

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.32151.1.A1_at [+] Str.51297.1.S1_at
Affymetrix 2.0			Xl2.46313.1.S1_at [+] Xl2.21216.1.S1_at Xl2.30590.1.S1_x_at Xl2.30590.1.S1_a_at Xl2.30590.2.S1_at

Symbol legend[+]