Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Gene Literature (143) GO Terms (13) Nucleotides (48) Proteins (30) Interactants (269) Wiki
XB-GENEPAGE-478344
Gene Symbol:
vax1

Gene Name:
ventral anterior homeobox 1

Synonyms:
vax , vax1b , vax1b-a , xvax1b , xvax1 , vax1-b , vax1-a ( Add synonyms , Nomenclature history )

Gene Function:
homeodomain transcription factor

Protein Function :
Involved in ventral eye development.


InterPro :
Homeobox metazoa , HTH motif , Vax1 , Homeobox dom [+]

Interactants:
Loading ...

Diseases: 


Disease Ontology:
syndromic microphthalmia 11

OMIM:
MICROPHTHALMIA, SYNDROMIC 11; MCOPS11

External Links:
1/4
 
Xenbase Gene ID XB-GENE-478345 XB-GENE-1188142 XB-GENE-6252856
Gene Symbol vax1 vax1.L vax1.S
Chromosome Chr7 chr7L chr7S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.1 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 100486982
378629
373698
mRNA NCBI Nucleotide NCBI Nucleotide NCBI Nucleotide
Protein NCBI Protein RefSeq Swiss-Prot  More.. RefSeq Swiss-Prot  More..
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine vax1 vax1.L vax1.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards VAX1 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Vax1 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Vax1 Ensembl
zebrafish
ZFIN, AGR vax1 ZFIN Ensembl
chicken
GEISHA VAX1 Ensembl
fruit fly
worm
Publications
First Vax1 is a novel homeobox-containing gene expressed in the developing anterior ventral forebrain., Development 1998              
Most Recent The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery., Nat Genet 2016                                
All View All Papers 3 paper(s) referencing morpholinos 2 paper(s) referencing OMIMs 2 paper(s) referencing Disease Ontology
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 11 terms 7 terms 7 terms
PANTHER vax1
KEGG Pathways K09318 K09318
KOG [K] Transcription factor EMX1 and related HOX domain proteins
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks vax1
Clones Horizon Horizon Source BioScience Horizon Source BioScience
Plasmids Addgene Addgene

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info   [+] Expand list