tnnc2 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

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Nucleotides (1547)

Interactants (0)

XB-GENEPAGE-480258

Gene Symbol: tnnc2 Gene Name: troponin C type 2 (fast) Synonyms: troponin C, skeletal muscle Add Xenopus synonyms Gene Function: calcium binding (EF-hand class protein) Interactants:

XB-GENE-480259

XB-GENE-865359

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_203626\|Xenopus (Silurana) tropicalis troponin C type 2 (fast) (tnnc2), mRNA CAGAAGAGGAAACAGATACCTCCTGCCATCCTTCTCCTCTGCAGGCATTTGGGGTGACCTGCCAAGATGCCTACAGACCAACAGCAAGATGCGAGGTCCTTCCTCAGCGAGGAAATGATTGCTGAGTTCAAGGCTGCCTTTGACATGTTTGACACTGATGGTGGCGGTGATATCAGCACCAAGGAGTTGGGAACTGTCATGAGGATGTTAGGACAGAACCCAACCAAGGAGGAGTTGGATGCCATCATTGAGGAAGTAGATGAGGATGGCAGCGGCACTATCGACTTTGAGGAGTTCTTGGTCATGATGGTGCGCCAGATGAAAGAGGATGCGCAGGGCAAAAGTGAAGAGGAGTTGGCTGAGTGCTTCCGCATTTTTGACAAGAATGCTGATGGGTACATTGATGGCGAGGAGTTAGCTGAAATCCTCCGTTCCTCAGGTGAGAGCATAACAGATGAGGAGATTGAGGAGCTTATGAAAGATGGAGACAAAAACAACGATGGCAAAATTGACTTTGATGAGTTCTTGAAGATGATGGAAGGTGTGCAGTAAGCAGTAGGACATTCCTCTGGAGCGTTGTGACGCCAACCTGTACATTACACTGCGTCTTACTTACATTTCAGGAAGGAGCAAGTCATCCTGCTCTTTTACTGTACCTCCCACAATCCTCCTCGCTTCTGATGTGTACATTACTCTCTATGGCCACCTTGCATCCTGCAGAGAACCTCTTAATCCACTGTTTACTATCAGGCTCTCTACCCTCTTCATCTTCCTGTTTTTCTGACTCATATGTTATTTATAAAAAAAAATTACAGTTACCATTAAAACTCTTAGTGAACCTTTGCTATCTCTGGGCTGCATTCATACTCAGAAGAGGATAGAAACTCCTTTAGATATCTATTTGTGGTGCAAAGCAAATGTAGCAGTATCTTTTTTTGCTCAATGCTCACATAAATAGCAGCATTAAAAAGTTTTGAGACACACTAGCTTATGGCTACCCCATTCCACCCTAGAGGGCTGTCTAGTTTGCCTAATAATAACACAGAAGCTGCCAACCTCATGCTGACACGTAGACACAGTGGAAAGCACTAATATTTTTGCATATCCGTTATTTTCACATTCATACAATTCAGCATGTAAATAAAAAGGGTGATGTATTTTGAAAAAAAAAAAAAAAAAAA	Refseq >NM_001085939\|Xenopus laevis troponin C type 2 (fast) (tnnc2), mRNA GGAGTCATCTGTGGACATAGTGTTGTGACAGAGCTCTGTGTCCATTGCCACCATGGCACAGCCTACAGATCAGCAACAAGATGCGAGGTCCTTCCTCAGCGAAGAAATGATCGCTGAGTTCAAAGCCGCCTTTGACATGTTTGACACTGATGGTGGCGGTGACATCAGCACCAAGGAGTTGGGAACTGTCATGAGGATGTTGGGACAGACCCCAACCAAGGAGGAGTTGGATGCCATCATTGAGGAAGTAGATGAGGACGGCAGCGGCACTATCGACTTTGAGGAGTTCTTGGTCATGATGGTGCGCCAGATGAAAGAGGATGCGCAGGGAAAAAGTGAAGAGGAGTTGGCTGAGTGCTTCCGCATTTTTGACAAGAATGCCGATGGGTACATTGATGGTGAGGAGTTAGCTGAAATCCTCCGTTCCTCAGGGGAGAGCATCACAGATGAGGAGATTGAAGAGCTTATGAAAGATGGAGACAAAAACAACGATGGCAAAATTGACTTTGATGAGTTCCTGAAGATGATGGAAGGTGTGCAATAAGCAGTAGGACATTCCTCTGGAGCGTTGTGACGCCAAACTGTACATTACACTGCGTCTTACATACTTTTCAGGAAGGGGCAAGTCACCCTGCTCTTTTCCTGTACCTCCCACAATCATCCTTGCTTCTGATGTGCACATCACTCTCCACAGCCAACTTGCATCTTGCAGAGAACCTCTTAATTCACTGTTTACTCTCAGACTTTCCACCCTTTGCATTTTTCTCTGTATTTCTGACATATGTTATTTATAAGAAAAAATACAAAGTGACCATTAAAACTATTAGTGAACCTTTATTATCTCTGGGCTGCATTCATAGAAACTCCCGATCTAGCTGTGGTACAAAGCAAATGTCGCAGTACTTTTTTGCTCAACTCTCTTGTATAAAACAGCAATTATAGTTTTGGGACACAGCAGATAATGGCTACCCCCATATGCCACTCTAGAGAGCTGCCTACTCTGCCTAGTAGTAACACAGTGGAAAGCACTAATATATTTGCATATCCGTTATTTTTACATTCTTACATTTCAGCATGTAAATAAAAGGGTGATGAATTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_988957\|troponin C type 2 (fast) [Xenopus (Silurana) tropicalis] MPTDQQQDARSFLSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRIFDKNADGYIDGEELAEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMMEGVQ	Refseq >NP_001079408\|troponin C type 2 (fast) [Xenopus laevis] MAQPTDQQQDARSFLSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRIFDKNADGYIDGEELAEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMMEGVQ

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.5631 [+] Str.29663 Str.43614	Xl.24572
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		31 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	TNNC2
mouse		MGI	Tnnc2	All(3) Targeted, knock Out(1) Targeted, other(2)
zebrafish		ZFIN	tnnc2

Publications
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Most recent:
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Functional Ontologies
GO: Molecular:		calcium ion binding
Biological:
Cellular Component:
EC:
KOG:		[T] Calmodulin and related proteins (EF-Hand superfamily)

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.5631.1.S1_a_at [+] Str.29663.1.A1_x_at Str.43614.1.A1_x_at Str.30177.1.A1_at	Xl.24572.1.S1_a_at
Affymetrix 2.0			Xl2.24572.2.S1_a_at

Symbol legend[+]