gdf1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (180)

Nucleotides (157)

Interactants (211)

XB-GENEPAGE-481418

Gene Symbol: gdf1 Gene Name: growth differentiation factor 1 Synonyms: vg1, vg-1, dvr1, dvr-1, gdf-1 Add Xenopus synonyms Gene Function: tgf-beta related peptide growth factor Interactants: tgfb1(53) , vegt(32) , nodal(31) , bmp4(15) , gdf3(15) , nodal1(14) , wnt11b(14) View All	1/4

XB-GENE-481419

XB-GENE-481423

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016819\|Xenopus (Silurana) tropicalis growth differentiation factor 1 (gdf1), mRNA CTTGCCAGCATGGTGTGGCTCAGGCTGTGGGCTTTCCTGCATATTGTTGCTATTGTAACCTTAGACTCTGAGATCAAGAGGCGTGAAGAGCTGTTTTTGAGGAGTTTAGGTTTCTCTTCCAAGCCTGACCCTGTATCTCCTCCTCCTGTCCCATCTATACTCTGGAGGATATTTAATCAAAGAATGGGTGGTTCAGTTCAAAAGAAGAAACCAGACCTGTGCTTTGTGGAGGAATTTAATGTACCAGGCAGTGTTATCAGAGTGTTCCCTGATCAAGGTCGGTTTGTTCTTCCCTACTCCGATAACAGCCACCTGACACAATGCTTGGAAAAGAGACTTTTCTTCAATATCTCTGCAATAGAGAAAGAAGAGAGAGTGACCATGGGGCAGTTGGAACTAAGGTTTACCCAGAACACCTATTATGGAAGGGTGTTTGACCTGCGTCTTTACCGCACATTACAGATCACCCTTAAAGGGATGGGAAGAAACAAAATGAGCAGAAAGCTGCTGGTGGCCCAAACTTTCCGCCTTCTTCATAAATCCGTCTTCTTTAACCTGACAGACGTTTGCCAAAGCTGGCGAGACCCACTAAAGAACTTGGGTTTGGTCTTGGAGATCTTTCCTATAAAGGAAGGCTCCTGGTTATCGACACCTAAAGATGAATGCAAGGACTTCCAGACCTTTCTCTATACCTCCTTGATGATGGTGACCCTCAATCCAATGCAGTGTAAAAGGCCACGCAGAAAAAGAAGCTATAGCAAACTGCCTTTTACTGCCAGCAATATCTGCAAAAAGAGGCGCCTTTATGTTGAGTTTAAAGATGTTGGGTGGCAAAACTGGGTGATTGCACCCCGTGGTTACATGGCCAACTACTGCTATGGCGAATGTCCATACCCACTGACAGAAATACTAAATGGATCCAACCATGCAATCCTGCAGACCTTGGTACATTCTATTGAGCCAGATGACATTCCTCTTCCTTGTTGCGTTCCTACCAAAATGTCTCCCATATCAATGTTGTTCTATGACAATAATGACAATGTGGTGCTGAGACACTATGAAAACATGGCAGTAGATGAATGTGGTTGCAGGTGACCATGTGTGCAAATCATTTGAGTCTGCCTCTGTATTTCTGTTAATGTGTGCTACATTTGTGTGCTTGGTATTCATATAGGAGTATTTATTCCTTCCTAAACCAATCAAAGTGAATAATTACTGATAAACTGATAACAAGGATGTGGCTTAAATGTGGGCAATGGTTCTGTTTGCTACAGATCCACATTCCGTCATGGAGTTCATGGCCTGTTAGAAAAATATCACTGTGCTACAGGCAATTTCTAATTTAATTTTATAACTCTCTCTTATAGATTGTCATTCTTAATGTATTCACACTTCTGCATTATCCACTAATTCTTAATTAAGTGCTAATAAGGGGGTGGGGCATCATATTGATTTGCCTTGAACGTTAGCAGCTAAGGAGCATATATCCTAAAATCCACTTTGAACAAATGATGTATTTTTCACTATATTGTATTAATGATGATGATAATGTAATGTGGTGATTGCTCTGTTTCACTAAAATGGGGTAGGGTACTGGCACTATTCACTGCAAAGAGGTATACTCCTCATAAATGGATAAAATTGTCCTTATGAATTTAGCTTCTCAGGCAGGTTGGGACCTAACAGGACATTTGCACTGGTGAAATGTTGGTTACACTGTGCTTCACACACAAACATAGGGAACACAAATACCCTCTAATTCCAGTTTTTGCAATGAAATAATATGTCCCAAACATTATTCATCCTATACTGGGGAGTCCCAGCACTATGGACATTGATGCTGCTGGCATACAAGTGGTATTTAAACACATTTGTTTTTAAAAATATGTATTTTAAACACTCCAATGTTTTTACACTGCCTGTCCGGCATTTGTCTGCAGAGAGGCAACTTAACTTATGCCTATTGCTTATCATTACCTATTGCTTATTGCTTTACCATAGAAGAGTTTCCTATAAAGGAAAGAAGTGGGTAAAATATAACTTGCCTTGGAAACATACAACCATACAAAACCCCTAAACTAACAGTAATGAACATAGTAGTATGTGTGCTATAGTTGGAGAGCCACAGGTTTGGCTACCAGGGTCTGTCTGTCTTTAGATATTTGTCAATTGTATACAGGATATTTCCTGAATTGTAAACTTATTGGTTTTAAATTCTGAATAAATCATATTTGGATTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001095591\|Xenopus laevis growth differentiation factor 1 (gdf1), mRNA ATCGAATTCCCCGGGAGACTAGCTTGTCAGTATGGTGTGGCTGAGACTGTGGGCTTTCCTGCATATACTTGCTATTGTAACTTTGGATCCAGAGCTCAAGAGGCGGGAAGAGCTGTTTCTGAGGAGTTTGGGTTTCTCTTCCAAGCCTAACCCGGTATCTCCTCCTCCTGTCCCTTCTATACTTTGGAGGATATTCAACCAAAGGATGGGGAGCTCCATTCAGAAAAAGAAACCAGACTTGTGCTTTGTGGAGGAATTTAATGTTCCTGGTAGTGTTATCAGAGTGTTCCCTGATCAAGGTCGGTTTATTATTCCCTACTCCGATGACATCCACCCAACACAATGCCTGGAAAAGAGACTTTTCTTCAATATCTCAGCAATAGAGAAGGAAGAGAGAGTCACCATGGGGCAGTTGGAATTGAGGTTCAGCCAGAACACCTATTACGGAAGGGTATTTGATCTGCGTCTCTATCGCACATTACAGATCACGCTTAAAGGGATGGGAAGAAGCAAAACAAGCAGAAAGCTGTTGGTGGCCCAAACTTTCCGTCTTCTGCATAAATCCCTCTTTTTTAACCTGACTGAAATTTGCCAAAGCTGGCAAGACCCACTGAAGAACTTGGGTTTGGTCTTGGAGATCTTTCCTAAAAAGGAAAGTTCCTGGATGTCGACCGCTAACGATGAGTGCAAAGACATACAGACCTTTCTCTATACCTCCTTGCTGACTGTGACCCTCAATCCTTTGCGGTGTAAAAAGCCACGTAGAAAAAGAAGCTATAGCAAACTGCCTTTTACTGCCAGCAATATCTGCAAAAAGAGGCGCCTTTATGTTGAGTTTAAAGATGTTGGATGGCAAAACTGGGTGATTGCACCTCAAGGTTACATGGCCAACTACTGCTATGGAGAGTGTCCATACCCGCTGACAGAAATACTTAATGGGTCCAACCATGCAATTCTGCAGACCTTGGTCCACTCTATTGAGCCAGAAGACATTCCTCTTCCTTGCTGTGTTCCGACAAAAATGTCTCCCATATCAATGTTATTCTATGACAACAATGACAATGTGGTGCTGAGACATTATGAAAACATGGCAGTAGATGAGTGTGGCTGCAGGTGACCATATGTGCCAGTACATACAAATAATTTGATTCTATTAATTAGTATTCCTGTTAATGTGACCTACTAGTGTATGCTTGTTCCTGTAGTTATTAATATGGGAGAATTTATTTGTAACCCGATCAAGGTTAATAGTTACTGCTTGGATTAAGCAATGGATGTAGCTTACACATAGGCAACAATATTGTGTGCTACAGATCCACATTCACTACCATCAGTGTTCATGGTCTGCTAGGAAAAATATACTGATCTAAAAGCAATATTTCTACTTTATTTCTACACTGTTATGTCATAAATTTTATCATTCTTAACGTATTCACAGTCCTGTATATGCACAGAGTATCTTGAGTGCTAGTAAGGGTGTTGGGACATCATCATATTGATTTGCCTTGACTGTTAGCTGTTAGCTGTTAAGGAGCACATATGCTAAAATTCACTTTGATCTTGTGTGAATGTATATATCACTATATGATGTTGTTAATAATAATATCTTAGAAGAACATGGTATATAACCTGATGACTTTTCTATTTCACTAAAATTAGATGAGGTGCTTGCACTATTCACTGCACAGAGGCGTAATCCTCCAATATGAAAATAAAAAAATATATAATAGTCCATATGACTTGAGCATTCTGGCCAGTGATAGATCTAACAGGTCATATGCACTGGTTGGTAGAAAGTTGGTTACACTGTCCTTCATGTACCAATAGGGAGGTAGATGCCATTGACATACAAGTGGTATTTAAATAATTATTTGTTTTTAAAAAATATATTTTTAGGCTCTAAATGCAATGTTTTTTTACGCTGCCGGTCTTGCATTTGTCTGTGGAAAGGCAACATAACTTATGCCTATTGCTTCTATTTGCTTCCCTATAAGATGAGTTTCCTATAAAGAAAATGGAGTGCATCTGTGGGGTAAAATACCTTAGACAATTTTTCATTGATACTTTTTAAGCTGCTTTTACATACCTAAAAATGCATCTTTGAGTGAAACCATCGTAAACCCCTGATGGACAGAATGGATAAAAATCATACAAAATCTGAAAACTAACAGTAATAAAAATGTTAATGTAGTGGTATTTCTGCTATAGCCATAGAACCACAGGTTTTGGTACCAGGGTGTGCCTATATAAAGATACTTGCTTATTGTAAACCATTGCTTTTAAATTGTGAATAAAATGTATTTGGATTTGTTTAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016819\|growth differentiation factor 1 precursor [Xenopus (Silurana) tropicalis] MVWLRLWAFLHIVAIVTLDSEIKRREELFLRSLGFSSKPDPVSPPPVPSILWRIFNQRMGGSVQKKKPDLCFVEEFNVPGSVIRVFPDQGRFVLPYSDNSHLTQCLEKRLFFNISAIEKEERVTMGQLELRFTQNTYYGRVFDLRLYRTLQITLKGMGRNKMSRKLLVAQTFRLLHKSVFFNLTDVCQSWRDPLKNLGLVLEIFPIKEGSWLSTPKDECKDFQTFLYTSLMMVTLNPMQCKRPRRKRSYSKLPFTASNICKKRRLYVEFKDVGWQNWVIAPRGYMANYCYGECPYPLTEILNGSNHAILQTLVHSIEPDDIPLPCCVPTKMSPISMLFYDNNDNVVLRHYENMAVDECGCR	Refseq >NP_001089060\|protein DVR-1 precursor [Xenopus laevis] MVWLRLWAFLHILAIVTLDPELKRREELFLRSLGFSSKPNPVSPPPVPSILWRIFNQRMGSSIQKKKPDLCFVEEFNVPGSVIRVFPDQGRFIIPYSDDIHPTQCLEKRLFFNISAIEKEERVTMGQLELRFSQNTYYGRVFDLRLYRTLQITLKGMGRSKTSRKLLVAQTFRLLHKSLFFNLTEICQSWQDPLKNLGLVLEIFPKKESSWMSTANDECKDIQTFLYTSLLTVTLNPLRCKKPRRKRSYSKLPFTASNICKKRRLYVEFKDVGWQNWVIAPQGYMANYCYGECPYPLTEILNGSNHAILQTLVHSIEPEDIPLPCCVPTKMSPISMLFYDNNDNVVLRHYENMAVDECGCR UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.6347	Xl.25780
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		16 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	GDF1	OMIM:217095 OMIM:187500
mouse		MGI	Gdf1	All(3) Targeted, knock Out(2) Targeted, other(1)
zebrafish

Publications
First:		Translocation of a localized maternal mRNA to the vegetal pole of Xenopus oocytes. [Nature 1987]
Most recent:		RNA localization in Xenopus oocytes uses a core group of trans-acting factors irrespective of destination. [RNA 2013]
		View All Papers 8 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		growth factor activity
Biological:		growth
Cellular Component:		extracellular region
EC:
KOG:		[T] Transforming growth factor beta, bone morphogenetic protein and related proteins

Reagents		tropicalis	laevis
Clones		EXRC - 1 clone(s)
		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.6347.1.S1_at	Xl.25780.1.S1_at
Affymetrix 2.0			Xl2.25780.1.S2_at

Symbol legend[+]