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Summary Expression Gene Literature (37) GO Terms (13) Nucleotides (114) Proteins (43) Interactants (263) Wiki
XB-GENEPAGE-487031
Gene Symbol:
sox5

Gene Name:
SRY-box 5

Synonyms:
XSox-5 ( Add synonyms , Nomenclature history )

Gene Function:
HMG-box transcription factor

Protein Function :
Transcription factor involved in chondrocytes differentiation and cartilage formation. Specifically binds the 5'-AACAAT-3' DNA motif present in enhancers and super-enhancers and promotes expression of ...[+]


InterPro :
HMG box dom sf , HMG box dom , SOX-5/6

Interactants:
Loading ...

Diseases: 


OMIM:
LAMB-SHAFFER SYNDROME; LAMSHF

External Links:
1/5
 
Xenbase Gene ID XB-GENE-487032 XB-GENE-17330161 XB-GENE-865667
Gene Symbol sox5 sox5.L sox5.S
Chromosome Chr3 chr3L chr3S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.1 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 100038209
108710702
100381154
mRNA NCBI Nucleotide NCBI Nucleotide NCBI Nucleotide
Protein RefSeq Swiss-Prot  More.. NCBI Protein NCBI Protein  More.. RefSeq Swiss-Prot  More..
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics X. tropicalis X. laevis.L X. laevis.S
Embryonic Protein Expression Stage profile:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine sox5 sox5.L sox5.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards SOX5 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Sox5 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Sox5 Ensembl
zebrafish
ZFIN, AGR sox5 ZFIN Ensembl
chicken
GEISHA SOX5 Ensembl
fruit fly
worm
Publications
First Hypaxial muscle migration during primary myogenesis in Xenopus laevis., Dev Biol 2001              
Most Recent The neural border: Induction, specification and maturation of the territory that generates neural crest cells., Dev Biol 2018      
All View All Papers 2 paper(s) referencing morpholinos
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 11 terms 0 term 8 terms
PANTHER sox5
KEGG Pathways K09269 K09269
KOG [K] HMG-box transcription factor SOX5
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks sox5
Morpholinos sox5 MO1 , sox5 MO2 , sox5 MO3 , sox5 MO4 sox5 MO1 , sox5 MO2 , sox5 MO3 , sox5 MO4 sox5 MO1 , sox5 MO2 , sox5 MO3 , sox5 MO4
Clones Horizon Source BioScience Horizon Horizon Source BioScience
Plasmids Addgene Addgene

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info   [+] Expand list