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Summary Expression Gene Literature (214) GO Terms (20) Nucleotides (120) Proteins (42) Interactants (518) Wiki
XB-GENEPAGE-490399
Gene Symbol:
lhx5

Gene Name:
LIM homeobox 5

Synonyms:
xlim-5 , xlim-2a , Xlim5 ( Add synonyms , Nomenclature history )

Gene Function:
LIM and homeodomain containing transcription factor

Protein Function :
Probably involved in the patterning of the nervous system, in particular in the early specification of the diencephalon.


InterPro :
Small GTPase Rho , Small GTPase , BTB/POZ dom , SKP1/BTB/POZ sf [+]

Interactants:
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Diseases: 


External Links:
 
Xenbase Gene ID XB-GENE-490400 XB-GENE-17330956 XB-GENE-865965
Gene Symbol lhx5 lhx5.L lhx5.S
Chromosome Chr1 chr1L chr1S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.1 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 548836
108715538
399270
mRNA RefSeq NCBI Nucleotide NCBI Nucleotide
Protein NCBI Protein RefSeq  More.. NCBI Protein NCBI Protein  More.. RefSeq Swiss-Prot  More..
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine lhx5 lhx5.L lhx5.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards LHX5 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Lhx5 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Lhx5 Ensembl
zebrafish
ZFIN, AGR lhx5 ZFIN Ensembl
chicken
GEISHA LHX5 Ensembl
fruit fly
worm
Publications
First The LIM class homeobox gene lim5: implied role in CNS patterning in Xenopus and zebrafish., Dev Biol 1995              
Most Recent Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Elife 2020                        
All View All Papers 5 paper(s) referencing morpholinos 1 paper(s) referencing OMIMs
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 18 terms 6 terms 7 terms
PANTHER lhx5
KEGG Pathways K18493 K18493
KOG [K] Transcription factor LIM3, contains LIM and HOX domains
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks lhx5
Morpholinos lhx5 MO1 lhx5 MO1 lhx5 MO1
ORFs lhx5.S ORF1
Clones Horizon Source BioScience Horizon Horizon Source BioScience
Plasmids Addgene Addgene

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