Gene Symbol: rab40b Gene Name: RAB40B, member RAS oncogene family Synonyms: rar, sec4l, rab40, xrab40 Add Xenopus synonyms Gene Function: small GTPase Interactants: rarg(9) , rarb(8) , cyp26a1(6) , rara(6) , aldh1a2(5) , lhx1(4) , egr2(3) View All

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001078720|Xenopus (Silurana) tropicalis RAB40B, member RAS oncogene family (rab40b), mRNA GGAGCTGGAGGGACAGCTGAACACATTGGCATGAGTTTCCCAGCCGGAGTGCTCCTGTGAAATTACTTACGTGCTTCTGCCATGATGGGCTGATGGAGAAGGCCTGTAACCGTGTGTGCCTCGGGGAAGAGGATGACCCACAGAGCCAGCCCAGTGAAAGCCTATGACTTCCTGCTGAAGTTCCTTTTGGTTGGGGACAGTGATGTTGGCAAAGGGGAGATACTGGCAAGCCTGCAGGATGGATGCACAGAGTCACCTTACGGTTACAATATGGGGATCGACTACAAGACAACCACGATCTTACTGGACGGTCGTCGGATAAAGTTACAGCTCTGGGACACGTCGGGCCAGGGAAGGTTCTGCACAATATTTCGCTCCTATTCGAGGGGTGCTCAGGGTGTGATTTTGGTGTATGACATCACAAACCGCTGGTCGTTTGACGGCATAGATCGCTGGATTAAAGAGATAGATGAGCATGCTCCTGGGGTGCCCAAAATCCTGGTGGGCAACCGCCTGCATTTGGCCTTTAAACGGCAGGTGTCCACAGACCAAGCACAGAACTTCGCTGAGCGGCTCGGCATGACGTTCTTTGAGGTCAGCCCCCTGTGTAACTTCAACATCACAGAGTCGTTCACTGAACTGGCGCGGATAGTTCTAATGAGGCATGGGATGGACCGACTCTGGAGGCCCAACAAGGTACTGAGTTTACAAGACCTGTGCTGCCGAGCCATCGTGTCCTGCACCCCAGTGCACCTCGTGGACAAGCTCCCTCTCCCCGTTGCCTTAAGAAGCCATTTAAAATCTTTCTCCATGGCCAACGGTCTGAACGCCAGAATGATGCACGGCCGCTCCTACTCTCTGACCGCCAACAACGCGAACAAGAGGAACAGCCTCAAAAAAGCCAAGATCATCCGCCCCCCTCAGAGCCCCCCGAAAAACTGTACCAGAAACAGCTGCAAAATCTCCTAGTCTTGGGCCCCGTCAGACTTGTTGTTCTCGTTTGTTCCCTTGCTTTCTGGCACCTGGAGCCCTCAGGATTTGTAAAGAAATAATGCTCCATGTTTGGGGTTGGCTGAAAGCCGACGGCGCAAGCGGCGGCGAATCCCGCGGAGATCAGGAGGCTAAATGCTGCTTTGAAATCTAATTTCGGACACTACAAAAAAAAAAAAAAA	Refseq >NM_001093844|Xenopus laevis RAB40B, member RAS oncogene family (rab40b), mRNA GGGGAGAGCAGGTTGTAGCGAGGCTGGCGCTGGAGGTGGATACAGCTGAACAGCACACCGTGACATGAGTTTCCCAGCCATATTGCTTTTGTGAAATTATTTGCATGCCTCTGCTATGATGGGCTGACAGAGGAGGCCTATAACTGCGTGCATCTCTGAGAAGAGGATGACCCACAGAGCCAGCCCAGCGAAAGCCTATGACTTCCTTCTGAAGTTCCTTTTGGTTGGGGATAGTGATGTTGGCAAAGGAGAGATACTGGCAAGCTTGCAGGATGGATCCACAGAGTCGCCTTATGGTTACAATATGGGGATCGACTACAAGACAACCACAATATTACTGGATGGTCGTCGGATAAAGTTACAGCTCTGGGACACGTCGGGGCAGGGAAGGTTCTGCACAATATTTCGCTCCTATTCGAGGGGTGCTCAGGGTGTAATTCTGGTGTATGACATCACAAACCGCTGGTCGTTTGACGGGATAGATCGGTGGATTAAAGAGATAGATGAGCATGCTCCTGGGGTGCCCAAAATCCTGGTGGGGAACCGGCTTCATTTGGCCTTTAAACGGCAGGTGTCAACAGACCAAGCACAAAACTTCGCTGAGCGGCTCGGCATGACATTCTTCGAGGTCAGCCCCCTGTGTAACTTCAATATCACGGAGTCGTTCACTGAACTGGCACGGATAGTTCTAATGAGACATGGGATGGACCGACTTTGGAGGCCCAACAAGGTACTGAGTTTACAAGACCTCTGCTGCCGAGCCATTGTATCCTGCACCCCAGTGCACCTCGTGGACAAGCTTCCTCTCCCTGTTGCCTTAAGAAGCCATTTAAAATCGTTTTCCATGGCCAATGGTTTGAACGCCAGAATGATGCATGGTCGCTCCTACTCGCTGACTGCCAACAACACAAACAAGAGGAACAGCCTCAAAAAAGCCAAGATCATCCGTCCCCCTCAAAGCCCCCCAAAAAACTGTACCAGAAACAGCTGCAAAATCTCCTAGTCTTGGGCTCCGTCAGACTTTCCTTTTTGTTTTCTTGCTTTTTTTCGTCTGGAGCCCTCAGGATTTGTAAAGAAATAATGCTCCACATTTAGGAACGGCTGAAAGCTGACAGCATAAACAGCAACGAACCCCTTGGAGATCAGGAGACTAAATGCTGCTTTGAAATCTGATTTCGGACACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001072188|RAB40B, member RAS oncogene family [Xenopus (Silurana) tropicalis] MTHRASPVKAYDFLLKFLLVGDSDVGKGEILASLQDGCTESPYGYNMGIDYKTTTILLDGRRIKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVSTDQAQNFAERLGMTFFEVSPLCNFNITESFTELARIVLMRHGMDRLWRPNKVLSLQDLCCRAIVSCTPVHLVDKLPLPVALRSHLKSFSMANGLNARMMHGRSYSLTANNANKRNSLKKAKIIRPPQSPPKNCTRNSCKIS	Refseq >NP_001087313|RAB40B, member RAS oncogene family [Xenopus laevis] MTHRASPAKAYDFLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRIKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVSTDQAQNFAERLGMTFFEVSPLCNFNITESFTELARIVLMRHGMDRLWRPNKVLSLQDLCCRAIVSCTPVHLVDKLPLPVALRSHLKSFSMANGLNARMMHGRSYSLTANNTNKRNSLKKAKIIRPPQSPPKNCTRNSCKIS

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase
Synteny		Metazome

Expression		tropicalis	laevis
UniGene		[+] Str.14347	Xl.23887
Unigene EST Profile			EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human			RAB40B
mouse		MGI	Rab40b	All(2)
zebrafish		ZFIN	rab40b

Publications
First:		A retinoic acid receptor expressed in the early development of Xenopus laevis. [Genes Dev 1991]
Most recent:		Median facial clefts in Xenopus laevis: Roles of retinoic acid signaling and homeobox genes. [Dev Biol 2013]
		View All Papers 5 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		GTP binding
Biological:		intracellular protein transport intracellular signaling cascade protein transport More[+] small GTPase mediated signal transduction
Cellular Component:
EC:
KOG:		[TU] GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins

Reagents		tropicalis	laevis
Clones			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0		Str.14347.1.S1_at [+] Str.14347.1.S2_at	Xl.23887.1.A1_at
Affymetrix 2.0			Xl2.23887.1.S1_at [+] Xl2.23887.1.S2_at

Symbol legend[+]

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