actb Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

My Xenbase
[Login] [Register]

Search

Summary

Gene Literature (37)

Nucleotides (3891)

Interactants (126)

XB-GENEPAGE-490882

Gene Symbol: actb Gene Name: actin, beta Synonyms: beta-actin Add Xenopus synonyms Gene Function: cytoskeletal constituent Interactants: igf2bp3(4) , myc(4) , zbp1(4) , gdf1(3) , hnrnpc(3) , hnrpdl(3) , ins(3) View All

XB-GENE-490883

XB-GENE-866011

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_213719\|Xenopus (Silurana) tropicalis actin, beta (actb), mRNA GGACAGTGTGTGTGTCGTACTCTCAGATTACAATGGACGACGATATTGCTGCACTGGTCGTTGACAATGGTTCTGGTATGTGCAAAGCCGGCTTTGCAGGTGATGATGCACCCCGTGCTGTTTTCCCATCCATTGTTGGTCGCCCAAGACATCAGGGTGTCATGGTTGGAATGGGACAGAAAGATAGCTACGTAGGAGACGAAGCTCAAAGCAAAAGAGGTATTCTTACACTCAAATATCCTATTGAGCATGGCATTGTCACTAACTGGGATGATATGGAGAAGATCTGGCATCATACCTTCTACAATGAACTCAGAGTGGCCCCAGAGGAACACCCAGTGCTGCTGACAGAAGCACCCTTGAATCCCAAAGCTAACCGGGAGAAAATGACGCAGATCATGTTTGAGACCTTTAACACTCCAGCTATGTATGTTGCCATCCAAGCTGTGTTGTCCCTGTATGCATCTGGTCGTACCACTGGTATTGTCATGGACTCAGGTGATGGTGTAACACACACTGTGCCAATATATGAAGGTTATGCTCTACCCCATGCCATTCTGCGTCTGGACTTGGCTGGACGTGACCTGACAGACTACCTCATGAAAATCCTCACTGAGAGGGGGTACAGCTTCACCACCACAGCTGAAAGAGAAATTGTTCGTGATATCAAGGAGAAATTGTGCTATGTTGCTCTGGACTTTGAGCAGGAGATGGCCACAGCTGCTTCTTCTTCATCATTGGAAAAGAGTTATGAGCTGCCTGATGGACAAGTTATCACCATTGGTAATGAGCGGTTTAGATGTCCAGAAGCACTCTTCCAGCCTTCTTTCCTTGGTATGGAATCCTGTGGCATTCATGAAACCACTTACAACTCAATTATGAAGTGTGATGTAGATATCCGTAAGGACCTCTATGCCAATACTGTTCTCTCTGGTGGAACCACAATGTACCCTGGAATTGCTGATAGAATGCAGAAAGAAATAACTGCACTAGCTCCCAGCACCATGAAAATCAAGATAATTGCTCCCCCTGAGCGTAAATACTCTGTCTGGATTGGCGGTTCCATCTTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCTGGGCCCTCAATAGTGCATCGTAAATGCTTCTAAAAGGACGGACCCTTTCAACGTGAACAAATGTACCTGTGCAGGAAGATAACATTGGCATGGCTTTTCTTTCATTGGCGCTTGGCTCAGATTTGATAACTGGAATGAACAAATAGCACTGTATGGTCATCAATGCAGAGGACATTATGATTTTATTCAGTCAATAGTATTGTATTGAGGAAGCTACCCTTTCAATGTTGCCCAGCTTGGTGGGAAGCTCATACAGAAATCATGGTGATACTATTGTGTTTTTTGATTTTTTTTTTTTTTTGTTTTTTTTCTTGTGCAGCTATGTACCCAAACATGTCTCTGTATCTTCTGCCTTGAACACTTGTAACTTGTTTAACCCAAAAAAGGGCATCATTCTCTAACACCTGGAAGGTTTACATTATCATTGATCACATAAGATGTGACGGGTCACCTGTAACCTAACTGAAAAAAATAAAACCAAGTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001088953\|Xenopus laevis actin, beta (actb), mRNA GGGGAGTGACCCGCCCGCATAGAAAGGAGACAGTCTGTGTGCGTCCAACCCTCAGATCACAATGGAAGACGATATTGCCGCACTGGTCGTTGATAATGGATCTGGTATGTGCAAAGCCGGCTTTGCTGGGGATGATGCTCCCCGTGCTGTTTTCCCATCTATTGTGGGTCGCCCAAGACATCAGGGTGTCATGGTTGGAATGGGACAAAAAGATAGCTATGTAGGAGATGAAGCTCAAAGCAAAAGAGGTATTCTTACACTCAAATATCCAATTGAACATGGCATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTGCGAGTGGCACCAGAAGAACACCCAGTGCTGCTCACAGAAGCACCCCTGAATCCTAAAGCTAACAGGGAGAAGATGACACAGATAATGTTCGAGACCTTTAACACTCCAGCTATGTATGTTGCCATCCAAGCTGTGTTGTCCCTGTATGCATCTGGTCGTACCACTGGTATTGTCATGGACTCAGGTGATGGTGTAACCCACACTGTGCCAATATATGAAGGCTATGCTCTACCACATGCCATTCTGCGTCTGGACTTGGCTGGACGTGACCTGACAGACTACCTCATGAAAATCCTAACTGAGAGGGGGTACAGCTTCACCACCACAGCCGAAAGAGAAATCGTTCGTGATATCAAGGAGAAATTGTGCTATGTTGCTCTGGACTTTGAGCAGGAGATGGCCACAGCTGCCTCTTCTTCATCATTGGAAAAGAGCTATGAGCTGCCTGACGGACAAGTCATCACCATTGGTAACGAGCGTTTTAGATGTCCAGAGGCCCTCTTCCAGCCATCTTTCCTTGGTATGGAATCCTGCGGTATTCATGAAACCACTTACAACTCAATTATGAAGTGTGATGTAGATATCCGTAAGGACCTCTATGCCAATACTGTTCTGTCTGGTGGTACCACAATGTACCCAGGAATTGCTGATAGAATGCAGAAAGAAATAACTGCACTAGCCCCCAGCACCATGAAAATCAAGATAATTGCCCCCCCTGAGCGTAAATACTCTGTCTGGATTGGTGGCTCCATCTTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCTGGCCCCTCAATTGTCCACCGTAAATGCTTCTAAAGGACAGACCCTTTCAACATGAACAAATGTACCTGTGCAGGAAGATCACATTGGCATGGCTTTACTCTTTTGTTGGCGCTTGGCTCAGAATTGATAACTGGAATGAACAAAATAGCACTGTATGGTCATCAATGCATCTGAGGACATTATGATTTTATTCAGTCAATAGTATTGTACTGAGGAAGCTACCCTCTCAGTGTTGCCCAGCTTGGTGGGAGCTCTTGCAGAAATCATGTTGATACTATTGGTTTTTGTTTTCTCGTGCAGCTATGTACCCAAACATGTCTCTGTATCTTCTGCCTTGAACACTTGTAACTTGTTTAACCACCCAAAGTATGGGGCTCATTCTCTTTAACATCTGGAAGGTTTACATTATCATTGATCACATAAGATGTGACTGGTCACCTGTAACCTAACTGAAAAAATAAAACTTATGTTGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_998884\|actin, cytoplasmic 1 [Xenopus (Silurana) tropicalis] MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF UniProtKB	Refseq >NP_001082422\|actin, cytoplasmic 1 [Xenopus laevis] MEDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.47413 [+] Str.11698 Str.25095 Str.26117 Str.57426 Str.67394 Str.69853 Str.74068 Str.84830	Xl.4138 [+] Xl.51547 Xl.59628 Xl.75598 Xl.75783 Xl.84416 Xl.14761
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		8 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	ACTB
mouse		MGI	Actb	All(16) Targeted, knock Out(2) Targeted, other(10)
zebrafish		ZFIN ZFIN	actb1 actb2	10 Lines(s)

Publications
First:		Changes in total RNA, polyadenylated RNA, and actin mRNA during meiotic maturation of mouse oocytes. [Dev Biol 1985]
Most recent:		Xenopus as a model system for the study of GOLPH2/GP73 function: Xenopus GOLPH2 is required for pronephros development. [PLoS One 2012]
		View All Papers 3 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		motor activity protein binding structural constituent of cytoskeleton
Biological:
Cellular Component:		actin filament
EC:
KOG:		[Z] Actin and related proteins

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.26459.1.A1_x_at [+] Str.26117.1.A1_at Str.25095.1.A1_at Str.43804.1.A1_at Str.48833.1.A1_x_at Str.48833.1.A1_at Str.26591.1.A1_x_at Str.10220.1.A1_at Str.47413.1.A1_at Str.6660.1.S1_at Str.6660.1.S1_x_at AFFX-Str-actin-3_x_at AFFX-Str-actin-3_at AFFX-Str-actin-5_at AFFX-Str-actin-M_at Str.11698.1.A1_at	Xl.4138.2.S1_x_at [+] Xl.4138.2.S1_at Xl.17560.1.A1_at Xl.25884.1.A1_x_at
Affymetrix 2.0			Xl2.51547.1.S1_at [+] Xl2.4138.1.S1_at AFFX-Xl-actin-3_at AFFX-Xl-actin-M_x_at AFFX-Xl-actin-5_at AFFX-Xl-actin-M_at Xl2.14761.1.A1_at Xl2.17560.1.A1_at

Symbol legend[+]