cbx3 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Nucleotides (1102)

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XB-GENEPAGE-492314

Gene Symbol: cbx3 Gene Name: chromobox homolog 3 Synonyms: xhp1g, heterochromatin protein 1 gamma Add Xenopus synonyms Gene Function: chromatin binding Interactants:

XB-GENE-492315

XB-GENE-492319

XB-GENE-6256525

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001122792\|Xenopus (Silurana) tropicalis chromobox homolog 3 (cbx3), mRNA GGACGGAGCAGGAGTCACCGGGTGCTGGTTATCCAAAGAGAGTGAGGTTTGTTTATTTTTGCTGGGCTAATAATCCTAGCAGCCAGGCAGTATTTTGGAAGTCAGAAGTAAAGATGAAGAGTGGAGGACTTCCACAATTAGAAATTAACATGACCATGGGAAAGAAACAGAATGGCAAGGGCAAGAAAGTGGAGGAAGCAGAGCCTGAAGAATTTGTTGTAGAAAAAGTTCTGGACAGACGTGTAGTAAATGGAAAGGTTGAATATTATCTCAAATGGAAAGGTTTCACAGATTCAGACAACACATGGGAACCTGAAGAAAACTTAGACTGTCCAGAGTTGATTGAAGCCTTTCTTAATTCTCAGAAAGCAGGAAAAGAAAAACCAGACAGCAACAAAAGAAAATCTGTGTCAGATAGTGAATCTGAAGATAGTAAATCAAAGAAAAAAAGGGAAACTGTTGATAAACCACGGGGCTTTGCAAGAGGTCTGGATCCAGAGAGAATAATTGGAGCTACAGACAGCAGTGGTGAATTAATGTTTCTTATGAAATGGAAAGATTCAGATGAAGCAGATCTGGTGCCTGCTAAAGAAGCAAATGTAAAGTGTCCTCAGGTCGTTATTGCATTTTATGAAGAAAGATTAACTTGGCATTCTTGTCCAGAGGATGAAGCACAATAAACTTTTTTTTTTCATGTTTGTTTTTTTTAAGTGATCAGCCACTTCAGGAACCTTCAAGATTTTTGTTTTAGTATTTGCAGAATAAGCCAAACTTTTGGTTATGGCCCCATGACATTGGCATGGCATAAGGAGCCTTTGATATGAAAAATTACTTTCTCTGGGCTTTTTATACATTTCAAATTATTGGAAGTTTCTGTATTATGCAAATTTTGCAAGTGTTTTGTAGTCTTCGGTCATTGTGCATGTTAATGCTTCTAACCTGTCTGTATGCTAGTTTCATTAGCACCAGTCCTTTGGTGGAAGAGGCCTGGGAATAACTTTGTAGTAAATGGAATGTTACCTTACTGTATATTGTTTACTTCAATGTAAATACTGGTGAGCAGTGTTCAATAAATAGTTTTATATTCTCAAAAAAAAAAAAAAA	Refseq >NM_001090483\|Xenopus laevis chromobox homolog 3 (cbx3-a), mRNA GCAGCTGCAGGGAGTCTCGGGCTGGAGAGCGTTGCTCGGTGAATTGGGGACGAGTCACTCACCGGGTGTTGGTTATCCTGAGAGTGTGAGGTACGGGAATAAGAGAGAGGAAGGTCATGCCCACCATGGGGAAGAAACAGAATGGCAAGAGCAAGAAGGTGGAGGAAGCCGAGCCTGAAGAATTTGTTGTAGAAAAAGTTATGGACAGGCGTGTAGTAAATGGAAAGGTTGAATATTACCTCAAATGGAAAGGTTTTACAGATTCAGACAACACCTGGGAGCCTGAGGAAAACTTAGACTGTCCAGAGTTGATTGAAGCATTCCTTAATTCTCAGAAGGCAGGGAAAGAAAAACCAGACAGCAACAAAAGGAAATCTGTGTCAGACAGTGAATCTGAAGACAGCAAATCAAAGAAAAAACGGGAATCTGTTGATAAACCACGGGGATTTGCAAGAGCTCTGGATCCAGAAAGGATAATTGGAGCTACAGACAGCAGTGGTGAATTAATGTTCCTTATGAAATGGAAAGATTCAGATGAAGCAGATTTGGTACCTGCTAAAGAAGCAAATGTAAAGTGTCCTCAGGTTGTTATTGCATTTTATGAAGAAAGATTAACTTGGCACTCTTGTCCAGAGGATGAAGCACAATAAACTTATTTTTCATGTAGAGTTTTTTTTTGTTTTTTTTTTTGATCCACCACTTCAGGAACCTTCAAGATTTTTGTTTTAGTATTTCCAGAATAAGCCAAATTTTTGGTTATGGCCCCGTGACATTGGCATGGCGTAAGGAGCCTTTGATATGTAAAATTACTTTCTCTCTGGGCTTTTTATACATTTCAAATTATTGAAAGTTTCTGTATTATGCAAATTTTGCAAGTGTTTTGTAGTCTTCTGTCATTGTGCATGTTAATGCTTTACTTCTAACCTGTCCGTATGCTAGTTTCATTAGCGCCAGTCCTTCCGTTGAAGAGGCCTGGGAAAAACTTTGTAGTAAATGGAATGTTACCTTACTGTATATTGTTTACTTCAATGTAAATACTGGTGAGCAGTGTTCAATAAATAGTTTTTATATTCTCCATAAAAAAAAAAAAAAAA		Refseq >NM_001087298\|Xenopus laevis chromobox homolog 3 (cbx3-b), mRNA GTGCGCACATCGGAGCTGCAGGGAGCCGCGGGCTGGAGAGCGTTGCTCGGTGTAAGGGGGACGGAGCAGGAGTCACCGGGTGCTGGTTAATCTAAGAGTGTGAGACCATGGGGAAGAAGCAGAATGGCAAGGGCAAGAAGGTGGAGGAAGCAGAGCCTGAAGAATTTGTTGTGGAAAAAGTTATGGACAGACGTGTAGTAAATGGAAAGGTTGAATATTACCTCAAATGGAAAGGTTTTACAGATTCAGACAACACATGGGAACCCGAGGAAAACTTAGACTGTCCAGAGTTGATTGAAGCGTTCCTTAATTCTCAGAAGGCAGGGAAAGAAAAACCAGACAGCAACAAAAGGAAATCTGTGTCAGACAGTGAATCTGAAGACAGCAAAGCAAAGAAAAAAAGGGAATCTGTTGATAAACCTCGGGGATTTGCAAGAGCTCTCGACCCAGAAAGAATAATTGGAGCTACAGACAGCAGTGGGGAATTGATGTTCCTTATGAAATGGAAAGATTCCGATGAAGCAGATCTGGTGCCTGCTAAAGAAGCAAATGTAAAGTGTCCACAGGTTGTTATTGCATTTTATGAAGAAAGATTAACTTGGCACTCTTGTCCAGAGGATGAAGCACAATAAACTTATTTTTCATGTAGTTTTTTTTTTTTTTTTTTTTTTAATCAGCCACTTCAGGAACCTTCAAGATTTTTGTTTTAGTATTTTCAAAATAAGCCAAATTTTTGGTTATGGCCCCATGACATTGGCATGGCATAAGGAGCCTCTGATATGTGAAAATTAATTTCTCTCTGGGCTTTTTATACATTTCAAATTATTGAAGTTTCTGTATTATGCAAATTTTGCAAGTGTTTTGTAGTCTTCTGTCATTGTGCATGTTAATGCTTTACTTCTAACCTGTCTGTATGCTAGTTTATTTAGCACCAGTCCTTCGGTGGAAGAGGCCTGGGAATAACTTTGTAGTAAATGGAATGTTACCTTACTGTATATTGTTTACTTCAATGTAAATACTGGTGAGCAGTGTTCAATAAATAGTTTTATATTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001116264\|chromobox homolog 3 [Xenopus (Silurana) tropicalis] MGKKQNGKGKKVEEAEPEEFVVEKVLDRRVVNGKVEYYLKWKGFTDSDNTWEPEENLDCPELIEAFLNSQKAGKEKPDSNKRKSVSDSESEDSKSKKKRETVDKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVPAKEANVKCPQVVIAFYEERLTWHSCPEDEAQ	Refseq >NP_001083952\|chromobox homolog 3 [Xenopus laevis] MGKKQNGKSKKVEEAEPEEFVVEKVMDRRVVNGKVEYYLKWKGFTDSDNTWEPEENLDCPELIEAFLNSQKAGKEKPDSNKRKSVSDSESEDSKSKKKRESVDKPRGFARALDPERIIGATDSSGELMFLMKWKDSDEADLVPAKEANVKCPQVVIAFYEERLTWHSCPEDEAQ		Refseq >NP_001080767\|chromobox homolog 3 [Xenopus laevis] MGKKQNGKGKKVEEAEPEEFVVEKVMDRRVVNGKVEYYLKWKGFTDSDNTWEPEENLDCPELIEAFLNSQKAGKEKPDSNKRKSVSDSESEDSKAKKKRESVDKPRGFARALDPERIIGATDSSGELMFLMKWKDSDEADLVPAKEANVKCPQVVIAFYEERLTWHSCPEDEAQ

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.45840 [+] Str.40727 Str.47195 Str.55180 Str.70135 Str.80651	Xl.82948		Xl.46826
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	CBX3
mouse		MGI	Cbx3	All(3) Gene Trapped(1)
zebrafish		ZFIN ZFIN	cbx3b cbx3a	4 Lines(s) 2 Lines(s)

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:		chromatin binding
Biological:		chromatin assembly or disassembly
Cellular Component:		chromatin nucleus
EC:
KOG:		[B] Heterochromatin-associated protein HP1 and related CHROMO domain proteins

Reagents		tropicalis	laevis a		laevis b
Clones		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.7994.2.S1_a_at [+] Str.45840.1.A1_at Str.47195.1.A1_at Str.47195.1.A1_x_at Str.40727.1.S1_at	Xl.2251.1.S1_at [+] Xl.2251.1.S1_s_at		Xl.24879.1.S1_at
Affymetrix 2.0			Xl2.24879.1.S1_at [+] Xl2.42445.1.A1_at		Xl2.46826.1.S1_s_at [+] Xl2.46826.1.S1_at

Symbol legend[+]