vim Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

My Xenbase
[Login] [Register]

Search

Summary

Gene Literature (75)

Nucleotides (967)

Interactants (117)

XB-GENEPAGE-493023

Gene Symbol: vim Gene Name: vimentin Synonyms: vimentin Add Xenopus synonyms Gene Function: intermediate filament Interactants: xk81a1(16) , vim.2(6) , wt1(3) , ckm(2) , hey1(2) , lmna(2) , lmnb1(2) View All

XB-GENE-493024

XB-GENE-866225

XB-GENE-6255792

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001134803\|Xenopus (Silurana) tropicalis vimentin (vim), mRNA GAGGGGTGCTCACATAGAAACTCAAGTGTCCAAGGAATTACAAAGGAAACCCAGAGCCTAAGCACCACAATGGCAACAACCAAGTCATCTTACAGAAGGATTTTCGGGGGAAACCCTAGGTCGAGCTCCTCTGGAAATCGCTATGTGACCTCCAGCACCAGGTATTCCCTGGGCAGTGCCATGCGCCCAGGCGCAGGCAGCAGCAGCAGCAGAGTTGTCTATTCCACATCTGCCTCCCCTGCTGTATTCAAGTCCTCCTCGGTAAGGCTGAGAAGCAGCCTTCCCCCAGCCAGGCTGGCAGACACAGTGGACTTCACCCTAGCAGATGCTGTCAACCTTGAATATAAAGCCAACAGGACCAACGAAAAGGCTGAAATGCAAGAGCTAAATGACAGATTTGCCAACTTCATCGACAAGGTGCGATTCCTGGAGCAGCAGAACAAGATCCTTGTGGCTGAACTGGAACAGCTGAAAGGGAAGGGAACCTCACGGATAGGGGACCTCTACGAGGAGGAGATGAGGGAGCTCCGTAGACAATTAGATCAAGTGACCAACGCTAAAGACCGGGTAGAAGTAGACAGAGACAACCTGGCCGATGACCTCCAGCGACTGAGAGAAAAGCTACAAGATGAAATGATCCAGAAGGAAGAAGCAGAAGGCAACCTGCAGTCATTTAGACAGGATGTGGACAATGCCTCTTTGGCACGTATTGACTTGGAGAGGAAAGTGGAGTCTTTACAAGAGGAGATTGTTTTCCTGAAGAAACTCCATGATGAGGAAATCCGAGAACTTCAGCTTCAAATTCAGGAGTCACATATCCAGGTTGACATGGATGTGTCCAAACCGGACCTCACTGCTGCCCTGCGTGATGTCCGCCAGCAGTACGAGAATGTGGCTGCTAAAAATCTTTCGGATGCCGAAGACTGGTACAAGTCTAAGTTTGCGGACCTGTCGGAAGCTGCTAATCGCAACAATGATGCCCTGCGTCAAGCTAAGCAGGATGCCAATGACTACCGCAGACAGATCCAGACTCTCACCTGCGAGATTGATGCAATGAAAGGATCTAATGAGTCTTACGAACGCCAAATGCGAGAAATGGAGGAGAATTTTGCCGGAGAAGCTGCTAATTATCAGGACACTATTCAGCGCCTGCAAGAGGAGATCCACAACATGAAGGAAGAGATGGCTCGGCACTTGCGAGAGTACCAGGATCTGCTCAATGTTAAGATGGCCCTTGATATAGAGATTGCTACTTACAGGAAACTCCTGGAGGGAGAAGAGAGCAGAATTACTGTTCCCGTACATTCCTTTTCTTCAATGAGCCTTAGAGAAACCAACCTTGATTCGCACCCAGTGGAAAGCCATTCCAAACGCACTCTGCTCATCAAGACTGTGGAGACAAGAGATGGACAGGTTATTAATGAAAGCTCTCAGCACCATGATGACCTGGAATGAAACTGAAATATCCAAAGCAAAGCGGAGAACCTTTACCAGCACCGTAATACTGTTACCTGTTTTAAAGTTTGAAGAAAACCAGCTTTCAAGTGCCTTTTGCAGTAAATTGGAGAGCACAAGATAGGGATAAGCTAACTGCTAATTAGGAGTTTGGTTTGAGTGACAGCCCTTGAGAAGGTCACACAGCGAGCTTCCTTCTGTCTAGTTTACAGACAATGTAATAGCAAAGATCTTGTGCCGCAATACTGTTTTTACATTCCCAAGAAAAAAGCTTTTTTTATTTCCAGGCAATGTGCAGCCAGTGCTTCAATAAATCTTTAGAAATAAAAAAAAAAAAAAA	Refseq >NM_001087439\|Xenopus laevis vimentin (vim-a), mRNA GGTGAGGTCAAGGGAAGCCGCTCGCAGATAAACTCAAGGAATTACAAAGGAAGCACCAACATGGCAACAACCAAGTCATCCTACAGAAGGATTTTCGGGGGAAACCCTAGGTCGAGCTCCTCTGGAAATCGCTATGCGACCTCCAGCACTAGGTACACCCTGGGCAGTGCCATGCGCCCGAGCACCAGCAGCAGCAGAATGGTCTATTCCACATCTTCCTCCCCCGCGGTGTTCAAGTCGTCCTCGGTCAGACTGAGGAGCAGCCTCCCCCCGGCCAGAATGGCAGACTCCGTAGACTTCGCCCTGGCAGATGCCGTCAACCTCGAGTTTAAAGCCAACAGGACCAACGAGAAGGCGGAGATGATCGAGCTCAACGACAGATTCGCCAACTTCATCGACAAGGTGCGATTCCTGGAGCAGCAGAACAAGATCCTGGTGGCGGAGCTGGAGCAGCTGAAAGGGAAAGGCACATCACGGATAGGGGATCTCTATGAGGAGGAGATGAGGGAGCTCCGCAGACAACTGGACCAAGCGACCAACGACAAAGCCCGAGTAGAAGTAGACAGGGACAATCTGGCCGATGATCTCCAGCGACTGAGAGAAAAGCTTCAAGATGAAATGATCCAAAAAGAAGAAGCAGAAGGCAACCTGCAGTCATTCAGACAGGATGTGGACAATGCCTCTTTGGCACGCATTGACTTGGAGAGGAAGGTTGAGTCCTTACAAGAGGAGATTGCTTTCCTAAAGAAACTCCATGATGAGGAAATCCGAGAACTTCAGCTTCAAATTCAGGAGTCACATATCCAGGTTGACATGGATGTGTCGAAACCAGATCTCACTGCTGCCCTACGTGATGTTCGCCAGCAGTATGAGAATGTGGCTGCTAAAAATCTTTCAGATGCCGAAGAATGGTACAAGTCTAAGTTTGCTGACCTGTCGGAAGCTGCTAATCGCAACAATGATGCCCTGCGTCAAGCTAAGCAGGAGACCAGTGACTTCCGCAGACAGATCCAGACTCTCACCTGCGAGATTGATGCAATGAAAGGATCTAACGAGTCTTACGAACGCCAAATGCGAGAAATGGAGGAGAACTTTGCCATTGAAGCTGCTAACTATCAGGACACTATTCAACGCCTGCAAGAGGAGATCCAGAACATGAAGGAGGAGATGGCTCGGCACTTGCGAGAGTACCAGGATCTGCTCAATGTTAAGATGGCCCTTGATATTGAGATTGCTACTTACAGGAAACTCCTGGAGGGAGAGGAGAGCAGAATTTCCCTTCCTGTACATTCCTTTTCTACAATGAGCCTGAGAGAAACCAACCTTGATTCTCACCCAGCGGAAACTCATTCCAAGCGCACTGTGCTAATCAAGACTGTGGAGACAAGAGATGGACAGGTTGTTAATGAAAGCTCTCAGCACCACGATGACTTTGAGTGAAATTGCAATATCCGGAACATAAGAGAGAACCTTTGCCAGCACCGTAATACTGGTGTGTTTTAAACTTTGAAGAAAACCAGCTTTCAAGTGCCTTTTGCAGTCAATTGGAGAGCGCAAGATAGGGATAAGCTAGCTGACAGTTAGGAGTTAGATTGACAGCCCTTGAGAAGGACAGACAGCGAGCTTCCTTCTGTCTAGTTTACAGACTGTAATAGCAATGATCTTGTGCCGCAAAACTGTTTTTACATTCCCAAAAAAAAAAAAAAAAA		Refseq >NM_001087438\|Xenopus laevis vimentin (vim-b), mRNA GAGTCCTGCTGAAGTACTAGCTGGGTGAGGACAAGGGAGAAACCTTAGCACCAACATGGCAACAACCAAGTCATCTTACAGAAGGATTTTCGGGGGGAACCCTAGGTCGAGCTCATCTGGAAGTCGCTATGTGACTTCCAGCTCTCGGTACTCCCTGGGCAGTTCCATGCGCCCGGGCACCAGCAGCAGCAGAATGGTCTATTCCACCTCTGCCTCCCCCGCCGTCTTCAAGTCGTCCTCGGTCAGACTGAGGAGCAGCCTCCCCCCGGCCAGAATGTCCGACTCCGTGGACTTCACCCTGGCAGATGCCGTCAACCTCGAGTTTAAAGCCAACAGGACCTACGAGAAGGCGGAGATGATCGAACTCAACGACAGGTTCGCCAACTTCATCGACAAGGTGCGATTCCTGGAGCAGCAGAACAAGATCCTGGTGGCGGAGCTGGAGCAGCTGAAAGGGAAGGGCACCTCGCGGATAGGGGATCTCTATGAGGAGGAGATGAGGGAGATCCGCCGACAATTGGATCAGGCGATCAACGAGAAAGCCCGAGTAGAAGTGGACAGAGACAACCTGGGCGACGACCTCCAGCGACTGAGAGAAAAGCTTCAAGATGAAATGATCCAAAGAGAAGAAGCAGAAGGCAACCTGCAGTCATTCAGACAGGATGTGGATAATGCCTCTCTGGCACGCATTGACTTGGAGAGGAAGGTTGAGTCCTTACAAGAAGAGATTGTTTTCCTGAAAAAACTCCATGATGAGGAAATCCGAGAACTTCAGCTTCAAATTCAGGAGTCACATATCCAGGTTGACATGGATGTGTCGAAACCGGATCTCACTGCTGCCCTACGTGATGTCCGCCAGCAGTATGAGAATGTGGCTTCTAAAAATCTTGCAGATGCCGAAGACTGGTACAAGTCTAAGTTTGCTGACCTGTCGGAAGCTGCTAATCGCAACAATGAAGCTCTGCGTCAGGCTAAGCAGGATACCAATGACTACCGCAGACAGATCCAGACTCTAACCTGCGAGATTGATGCAATGAAAGGATCTAACGAGTCTTACGAACGCCAAATGCGAGAAATGGAGGAGAACTTTGCCCTTGAAGCTGCTAATTATCAGGACACTATTCAACGCCTGCAAGAGGAAATCCAGAACATGAAGGAGGAGATGTCTCGGCACCTGAGAGAGTACCAGGATCTGCTCAATGTTAAGATGGCTCTTGATATTGAGATTGCTACTTACAGGAAACTCCTGGAGGGAGAGGAGAGCAGAATTACCATTCCTGTACATTCCTTTTCTACAATGAGCCTGAGAGAAACCAACCGCGATTCTCACCCAGTGGACACTCATTCCAAACGCACTCTGCTCATCAAGACTGTGGAGACAAGAGATGGACAGGTTATTAATGAAAGCTCCCAGCACCACGATGACCTGGACCTGGACCTGGAGTGAAATTGAAATATCCGGAACATAACCAGAGAACCTTTACCAGCACCGTAATAGCGTTGTGTTTTAAAATTTGAAGAAAACCAGCTTTCAAGTGCCTTTTGCAGTTAATTGGGGAGCGCAAGATAGGGATAAGCTAGCTGACAGTTAGGAGTTTGGTTTGGCAAGGACAGGCAGTGAGCTTCCTTCTGTCTAGTTTACAGACTATGTAATAGCAATTATCTTGTGCCGCAATACTGTTTTTACATTCCCAAGAAGAAAAAAAAGCTTTTTTTATTTCCAGGCAATGTGCAGCCAGTGCTTCAATAAATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001128275\|vimentin [Xenopus (Silurana) tropicalis] MATTKSSYRRIFGGNPRSSSSGNRYVTSSTRYSLGSAMRPGAGSSSSRVVYSTSASPAVFKSSSVRLRSSLPPARLADTVDFTLADAVNLEYKANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQRLREKLQDEMIQKEEAEGNLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMSLRETNLDSHPVESHSKRTLLIKTVETRDGQVINESSQHHDDLE	Refseq >NP_001080908\|vimentin-1/2 [Xenopus laevis] MATTKSSYRRIFGGNPRSSSSGNRYATSSTRYTLGSAMRPSTSSSRMVYSTSSSPAVFKSSSVRLRSSLPPARMADSVDFALADAVNLEFKANRTNEKAEMIELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGTSRIGDLYEEEMRELRRQLDQATNDKARVEVDRDNLADDLQRLREKLQDEMIQKEEAEGNLQSFRQDVDNASLARIDLERKVESLQEEIAFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEEWYKSKFADLSEAANRNNDALRQAKQETSDFRRQIQTLTCEIDAMKGSNESYERQMREMEENFAIEAANYQDTIQRLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPVHSFSTMSLRETNLDSHPAETHSKRTVLIKTVETRDGQVVNESSQHHDDFE UniProtKB		Refseq >NP_001080907\|vimentin-4 [Xenopus laevis] MATTKSSYRRIFGGNPRSSSSGSRYVTSSSRYSLGSSMRPGTSSSRMVYSTSASPAVFKSSSVRLRSSLPPARMSDSVDFTLADAVNLEFKANRTYEKAEMIELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGTSRIGDLYEEEMREIRRQLDQAINEKARVEVDRDNLGDDLQRLREKLQDEMIQREEAEGNLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVASKNLADAEDWYKSKFADLSEAANRNNEALRQAKQDTNDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFALEAANYQDTIQRLQEEIQNMKEEMSRHLREYQDLLNVKMALDIEIATYRKLLEGEESRITIPVHSFSTMSLRETNRDSHPVDTHSKRTLLIKTVETRDGQVINESSQHHDDLDLDLE UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.43578 [+] Str.26487 Str.25304 Str.25521 Str.79815	Xl.127 [+] Xl.55381		Xl.128
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		5 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	VIM
mouse		MGI	Vim	All(5) Targeted, knock Out(2) Targeted, other(3)
zebrafish		ZFIN	vim

Publications
First:		Widespread occurrence of intermediate-sized filaments of the vimentin-type in cultured cells from diverse vertebrates. [Exp Cell Res 1979]
Most recent:		Tcf21 regulates the specification and maturation of proepicardial cells. [Development 2013]
		View All Papers 2 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		structural molecule activity
Biological:
Cellular Component:		intermediate filament
EC:
KOG:		[DY] Nuclear envelope protein lamin, intermediate filament superfamily

Reagents		tropicalis	laevis a		laevis b
Clones		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.26487.1.A1_at [+] Str.25521.1.A1_at Str.43578.1.A1_at Str.11198.1.S1_at	Xl.127.1.S1_at		Xl.128.1.S1_at
Affymetrix 2.0			Xl2.127.1.S1_at [+] Xl2.55381.1.A1_at		Xl2.128.1.S1_at

Symbol legend[+]