snrpa Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (9)

Nucleotides (622)

Interactants (0)

XB-GENEPAGE-494245

Gene Symbol: snrpa Gene Name: small nuclear ribonucleoprotein polypeptide A Synonyms: mud1, U1A Add Xenopus synonyms Gene Function: spliceosomal protein Interactants:

XB-GENE-494246

XB-GENE-6254943

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016784\|Xenopus (Silurana) tropicalis small nuclear ribonucleoprotein polypeptide A (snrpa), mRNA CGTAAATTGGGCGTTGAATGAATTTAGGTACAAGGCCTTCCGGTGGCGGCAATCTCAGTTAATCACATTGGGTTTTAGTGCATGCGACTTGCGTTGCTATCTTGAAATATTTCCTGCTATTGTACGTTCCATCCGGGAAGTTTATTTCTTTTCCAGCGTACCGTATTCGTATCGTAGCACAAGCCCAGCGTTTAATTTGGCGGCCCTTTTAACTGTATCATATCCAGGCTGAGGATTAAGTTGTTGAGGAAGTATGGCTGTTCAAGAAGTCAGGCCTAATAACACAATCTACATCAACAACCTGAATGAGAAAATTAAAAAAGATGAGCTAAAGAAGTCTCTTTATGCCATATTCTCACAGTTTGGTCAGATTCTGGATATCTTGGTGTCTCGCAGCCTGAAGATGAGAGGACAGGCTTTTGTTATATTTAAAGAAATAAGCAGTGCCACAAATGCTCTGAGGTCAATGCAGGGGTTTCCCTTTTATGATAAACCAATGAGAATACAATATTCAAAATCCGATTCTGACATCATTGCCAAAATGAAAGGTACCTATGTGGAAAGAGACAGAAAGAGGCAGGAGAAGAGGAAGGTGAAAGGCCAGGAAGCTCCGGGTGTTAAAAAGGCTTTACCAGGTGCTGCGTTGCTTCCAGGCGTTCCAGGACAGATGGCGGGCATGCAAAATATACCTGGTATGACTCAAGCTCCACGCATGATGCATATGGCTGGGCAGGCACCCTACATGCATCACCCTGGTATGATGCCACCACCAGGGATGGCACCAGGACAGATCCCACCAGGAGGCATGCCCCATGGACACCTGATGCCTGGGCAGATGGCACCCATGCAGCCAATTTCTGAAAACCCACCTAACCACATCCTCTTCCTCACCAACCTTCCAGAGGAAACAAATGAGCTAATGCTATCTATGCTGTTTAACCAATTTCCTGGTTTCAAGGAAGTTCGACTTGTCCCTGGCCGCCATGACATTGCTTTTGTGGAATTCGATAATGAGGTTCAGGCAGGAGCTGCTCGCGAGTCTCTTCAGGGATTCAAGATCACACAGAGCAACTCCATGAAGATTTCATTTGCTAAGAAATAACAGGACAACACACTGGATTTTGTACCCTGTACTGTTCAATCCTCACGCACACTGACATGATTCAGGAGTCGGAGCAGAGTTTTTCCGAACAATAGTCAGATGTTGTATTATGGTTTTTTTGCCCCTTCTCCATCAATACGTGCAGATGCTAGGTTTTTTTGTTTTTTTTTTAAAAAAGTAAACTTTGTCTGATGAGATGAGGTGTCATAATGTTGGTGAGTAAAACTTATTAATATTTTTTAAAGTTTTTACTTTTAAGCATTGCACCCAGAGTCTGCAAGTCAGGCATTGTACCTGGAGCTTTTTTCTTTTCTTTGCAATAAACTTTCTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001086620\|Xenopus laevis small nuclear ribonucleoprotein polypeptide A (snrpa), mRNA CCCACGCGTCCGATCATTTGCTGTGTAAGGATAAAGGATTTAAGGAAACATGTCTATTCAAGAAGTTAGGCCGAATAACACAATCTACATCAACAACCTCAATGAGAAAATCAAAAAAGATGAACTAAAGAAGTCCCTCTATGCCATATTCTCGCAGTTTGGTCAGATTCTAGATATCTTGGTGTCTCGCAATCTGAAGATGAGAGGACAGGCTTTTGTTATATTTAAAGAAACAAGCAGTGCCACCAATGCTCTGAGGTCTATGCAGGGGTTTCCCTTCTATGACAAGCCAATGAGAATACAGTACTCAAAGACGGATTCTGACATAATTGCCAAAATGAAGGGTACCTTTGTGGAAAGAGACAGAAAGAGGCAGGAAAAGAGGAAGGTGAAAGTCCCGGAAGTTCAAGGTGTCAAAAATGCAATGCCAGGTGCAGCGCTGCTTCCAGGAGTTCCAGGGCAGATGGCGGCCATGCAAAATATGCCTGGTATGACTCAAGCTCCACGCATGATGCATATGGCTGGACAGGCACCCTACATGCATCACCCTGGTATGATGCCTCCACCAGGCATGGCACCCGGACAGATGCCACCTGGAGGTATGCCCCATGGGCAACTGATGCCTGGGCAGATGGCACCTATGCAACCAATTTCTGAAAACCCGCCGAACCACATCCTCTTCCTCACCAACCTTCCAGAAGAAACAAATGAGCTAATGCTATCTATGCTGTTCAACCAATTCCCTGGTTTCAAGGAAGTTCGGCTTGTTCCTGGCCGGCATGACATTGCCTTTGTGGAATTTGATAATGAGGTGCAAGCTGGAGCTGCACGGGAATCTCTTCAGGGATTCAAGATCACACAGAGCAACTCCATGAAGATCTCATTTGCTAAAAAATAAAGACTTAACACCGGATCACTCTTCATGTACACTGACATGACTCAGGAGTCTGAGCAGGGCTATTCTGAATTATGTTAAGATGTTTTATTTTGGGGTTTTTGCCCCTCTAAATACATGAAGATGTTATTTTTTAGTATACGTTGGTGTCACATTCATCTTGTTGGTGAGTAACATTTTAATTTTTTTCAAAACATTATTTCGTGTTTCAGCATTGCACCCAGAGTCTGCAACTCGGACATTGTACCTGGAGCTTGTGTTGTTGTAATAAACATGATTTGTCTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016784\|small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana) tropicalis] MAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDRKRQEKRKVKGQEAPGVKKALPGAALLPGVPGQMAGMQNIPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQIPPGGMPHGHLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK	Refseq >NP_001080089\|U1 small nuclear ribonucleoprotein A [Xenopus laevis] MSIQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKNAMPGAALLPGVPGQMAAMQNMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.65020 [+] Str.11638 Str.45030 Str.53430	Xl.5225
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SNRPA
mouse		MGI	Snrpa	All(3) Targeted, other(2) Targeted, knock Out(1)
zebrafish		ZFIN	snrpa

Publications
First:		Transcription signals in embryonic Xenopus laevis U1 RNA genes. [EMBO J 1985]
Most recent:		Post-transcriptional adenylation of signal recognition particle RNA is carried out by an enzyme different from mRNA Poly(A) polymerase. [J Biol Chem 1999]
		View All Papers

Functional Ontologies
GO: Molecular:		nucleic acid binding
Biological:
Cellular Component:
EC:
KOG:		[A] Spliceosomal protein snRNP-U1A/U2B

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.3059.1.S1_at [+] Str.27616.1.S1_s_at Str.45030.1.A1_x_at Str.47749.1.A1_at	Xl.5225.1.S1_at
Affymetrix 2.0			Xl2.5225.1.S1_at

Symbol legend[+]