rpl18a Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

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Nucleotides (2293)

Interactants (0)

XB-GENEPAGE-5774783

[provisional- machine annotated only] Gene Symbol: rpl18a [Predicted: Source is Human Entrez Gene] Gene Name: ribosomal protein L18a [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: 60S ribosomal protein L18A Interactants:

XB-GENE-5774784

XB-GENE-5775291

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016690\|Xenopus (Silurana) tropicalis hypothetical protein LOC549444 (LOC549444), mRNA CAGCATGAAGGCGTCCGGCACTCTAAGGGAGTATAAGGTCATCGGGCGCAGCCTGCCTACTCCCAAAGCTCCTTCTCCACCTCTCTATCGCATGAGAATTTTTGCTCCCAATCATGTGGTTGCCAAGTCCCGCTTTTGGTACTTTGTGTCTCAGCTTAAGAAGATGAAGAAATCATCAGGTGAAATTGTCTACTGCGGACAGGTATATGAAAAGACACCCCTGAAGGTGAAGAACTTTGGCATCTGGCTACGTTATGACTCTCGTAGTGGAACACACAACATGTACAGGGAATACAGAGATTTAACCACTGCTGCCGCTGTTACCCAGTGCTACCGTGATATGGGCGCTCGCCACCGTGCTCGTGCCCATGCAATTCAGATCATGAAAGTAGAGGTAATTCCTGCCAGCAAGTGTCGCAGACCTGCCATCAAGCAGTTCCACGACTCAAAGATCAAGTTCCCTCTACCACACAGAGTACTGCGTCGCCAGCACAAGCCACGTTTCACCACCAAGAGACCAAACACTTTCTTCTAAACAAGGCAAAAGAACTTTCCTTGACCTTTGGTCTAATAAAAATGTTTGGAAAACAAAAAAAAAAAAAAAAAA	Refseq >NM_001096737\|Xenopus laevis ribosomal protein L18a (rpl18a), mRNA TCGAGGCAGCATGAAGGCGTCCGGCACTCTAAGGGAGTATAAGGTCATCGGGCGCAGTTTGCCTACTCCCAAAGCTCCTTCTCCACCTCTCTATCGCATGAGAATTTTTGCTCCTAATCATGTGGTTGCCAAGTCCCGCTTTTGGTACTTTGTATCTCAGTTGAAGAAGATGAAGAAGGCATCAGGTGAAATTGTCTATTGTGGACAGGTATTTGAAAAGACCCCTCTGAAGGTGAAGAACTTTGGCATCTGGCTACGCTATGACTCTCGCAGTGGAACACACAACATGTACAGGGAATACAGAGATTTAACCACTGCTGCTGCTGTGACCCAGTGCTACCGTGATATGGGCGCTCGCCACCGTGCTCGTGCCCATGCAATTCAGATCATGAAAGTAGAGGTTATTCCTGCCAGCAAGTGTCGCAGACCTGCTATCAAGCAGTTCCATGACTCAAAGATCAAGTTCCCTCTACCACACAGAGTACTACGTCGCCAGCACAAGCCACGTTTCACCACCAAGAGACCAAACACTTTCTTCTAAACAAGGCAAAAGAACTTTCCTTGGCCCTTGGTCTAATAAAAATGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016690\|ribosomal protein L18a [Xenopus (Silurana) tropicalis] MKASGTLREYKVIGRSLPTPKAPSPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVYEKTPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTAAAVTQCYRDMGARHRARAHAIQIMKVEVIPASKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF	Refseq >NP_001090206\|ribosomal protein L18a [Xenopus laevis] MKASGTLREYKVIGRSLPTPKAPSPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKASGEIVYCGQVFEKTPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTAAAVTQCYRDMGARHRARAHAIQIMKVEVIPASKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.33529 [+] Str.21900 Str.29430 Str.72134	Xl.8369 [+] Xl.72831
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	RPL18A
mouse		MGI	Rpl18a	All(1) Targeted, knock Out(1)
zebrafish		ZFIN	rpl18a

Publications
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Functional Ontologies
GO: Molecular:		structural constituent of ribosome
Biological:		translation
Cellular Component:		intracellular ribosome
EC:
KOG:		[J] 60S ribosomal protein L18A

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		StrJgi.5714.1.S1_at [+] Str.22647.1.A2_s_at Str.29430.1.A1_at Str.49166.1.S1_at Str.9391.1.A1_at Str.21900.1.A1_at Str.22647.1.A1_at Str.37578.1.S1_at Str.43613.1.A1_at Str.45315.1.A1_x_at Str.40442.1.A1_at	Xl.16488.1.A1_at [+] Xl.8369.1.S1_at
Affymetrix 2.0			Xl2.8369.1.S1_a_at [+] Xl2.46995.1.S1_at Xl2.16488.1.A1_at

Symbol legend[+]