snrpb Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (9)

Nucleotides (1727)

Interactants (4)

XB-GENEPAGE-5877282

[provisional- machine annotated only] Gene Symbol: snrpb [Predicted: Source is Human Entrez Gene] Gene Name: small nuclear ribonucleoprotein polypeptides B and B1 [Predicted: Source is Human Entrez Gene] Synonyms: cod, snrpb1, smb/b', sm-b/b', snrnp-b, smb/smb' Add Xenopus synonyms Gene Function: mRNA processing Interactants: ercc6(2) , nd4l(1) , opn4(1) , tf(1) , View All

XB-GENE-5877283

XB-GENE-5877790

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001001198\|Xenopus (Silurana) tropicalis small nuclear ribonucleoprotein polypeptides B and B1 (snrpb), mRNA GTAGGAGTGAGGCTCCTTGGCGCAATTTTTTTTCTTCCCTTTGTCGGCCGTGCATCGGCGGAATCCTCGGTGCAATCATGACGGTGGGAAAAAGCAGCAAAATGCTGCAGCACATTGACTACAGAATGCGCTGTATCCTGCAAGATGGCCGGATCTTTATTGGAACATTCAAGGCATTTGACAAACACATGAATCTCATCTTATGCGACTGTGATGAGTTTAGAAAGATTAAGCCAAAGAACTCAAAACAGCCAGAACGAGAAGAAAAGAGAGTACTTGGTCTGGTGTTGCTTCGAGGGGAGAACTTGGTGTCAATGACTGTTGAAGGCCCACCTCCCAAAGATACTGGCATTGCCAGGGTTCCATTGGCAGGAGCTGCAGGAGGACCTGGAGTAGGAAGGGCAGCTGGCAGAGGTGTACCTGCTGGCGCACCTATGCCACAGGCTCCTGCTGGACTGGCAGGACCAGTACGTGGTGTTGGAGGACCTTCTCAGCAGGTTATGACCCCCCAGGGTCGTGGTAATGTGGCAGCAGCTGCTGCAGCTGCTACAGCAAGCATTGCTGGAGCTCCAACACCGTATGCAGCAGGTCGTGGCGGACCACCCCCACCAATGGGCAGAGGAGCACCTCCGCCAGGCATGATGGGACCACCCCCTGGTATGAGACCACCAATGGGTCCACCAATGGGAATGCCTCCAGGCAGAGGAGGACCTATGGGAATGCCACCTCCAGGGATGAGACCACCTCCACCCGGACCTCCACCACCTGGAATGCGACCCACTCGGCCATAAAACCTCAAGGCACATCTTGTGTTCAACTCCTGACTTTTCTGTTGACTCACTGGACTGTTCTGGTTCTTGTTTGTTTTATATTGTAAATGAAGCAGTTTTTAAATAAACACCATTTTTGATGTAGGTGCAGGTTTTTATTTGAAGGTGTTAAAGGGCCTGGTCTACCAACCCACCTTTACATTCTAAATAAACATTAAAGGGTGATGGCATAAATGGATATTGGATGCCCACTGTAGAGCAGTCTCTTGAAAATGCATTCCCACTGGCAAGTTATGCTGCTGAAGTTGCCCAAACCAAAACAATGGCAAACTGTCCAGACATTAATTATTAAATAGTAGCCAAACTGTAGATTCTAAAGATGGCACTGGTAGGTTGACTTCATCAACTGTGGCTCGGTGATGTACAATTTTTTTTTTATCCTAGGCTTTCTCTTTTGACAAGTTCTCCCTTTTATGCAGCAGATACTGCTGCATAAAAGGCCCACGGCTCTCTAAAGTTAGCAACTATTAATGTATTTCCATGGAAATCTGCAACTAATTCTGTGTAGGGGTTTTTAATTGTCCCTTAGGTTATTACTCTAAGCTGTTTTCTGACAACAGCTTCCCCTCCTAATCATCAAATGTGTAAAAACCAGGGTGCAAAGTAAGCCCTGAAGCTGCATTGGTACAGACCTGGAACTTAAGTTAATTCATTTACACTTTCAAACTATCAAGGTTGGTCACAAAGACATTAGCTTACTTGTCTAGGTGTGGACTGGCAAATGCCAGGGCCTAAGTTTGCTTCTATGTGTAAACATAACTGCTTTTCCTGCAGTGAAGACTGCACATTCCTCCTTTTACAGTACTTTCTCAAGAGCATGTGTCAATGTCCAAAACTGGAGCTGCAATAACCATTGCCACCAGAATATCTATTTGCGCATGCTTTGATAATTTTTAGTATGTTATAAAATGTCCTATTCCTAGCAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001096353\|Xenopus laevis small nuclear ribonucleoprotein polypeptides B and B1 (snrpb), mRNA CTTCCCTTTGTCGGCTGCGCATCGGCGGCATCCTCGGTGCAATCATGACGGTGGGAAAAAGCAGCAAGATGCTGCAGCACATTGACTTCAGAATGCGCTGTACCCTTCAAGATGGAAGGATCTTTATTGGAACATTCAAGGCATTTGACAAACACATGAATCTCATCTTATGTGACTGTGATGAATTTAGAAAGATTAAGCCAAAGAACTCCAAACAGCCAGAACGTGAAGAAAAGAGGGTACTTGGTCTAGTGTTGCTTCGAGGGGAGAACTTGGTGTCCATGACTGTTGAAGGCCCACCTCCCAAAGATACTGGCATTGCCAGGGTTCCATTGGCAGGAGCTGCTGGAGGACCTGGAGTAGGCAGGGCAGCTGGCAGAGGTGTACCTGCTGGAGCACCTATGCCTCAGGCTCCTGCTGGACTGGCAGGACCAGTACGTGGTGTGGGAGGACCATCACAGCAGGTTATGACGCCTCAGGGTCGTGGTAATGTGGTAGCAGCTGCCACAGCTAGCATTGCTGGAGCCCCAACACAGTATGCAGCAGGTCGTGGAGGACTACTTCCACCAATGGGCAGAGGAGCACCCCCTCCAGGCATGATGGGGCCACCCCCTGGCATGAGGCCGCCAATGGGTCCACCAATGGGAATGCCTCCAGGCAGAGGAGGACCTATGGGAATGCCACCTCCAGGCATGAGACCACCTCCACCTGGACCTCCCCCACCTGGCATGCGACCCGCTCGGCCATAAACTCAATACATTTGTGTTCCAACTCCTGACCTTTCTGTTGACTCACTTTGACTGTTCTGGTTCTTGTTTGTTTTATATTGTAAATGAAGCAGTTTTTAAATAAACACCATTTTGATGTAGGTGCAGACTCTGTTAAGGGGTTAATCTAACCCCACCAACAACAAACCTTTTGATTTTTAAATACAAATTTAAGCTGTAGGAGGTGACCTCTTAGAAATACCAAAGGTTTGGTCTGTCCAGGATCCTGCTCGAAAAATCGGCAGTAAATAAGTGGCATATAGGTAACCATTTCTAACCATCTCTAATAAGATTAGACTGGCGCTGTATCAACCTGATAAAAGGGTATATGAATGCACCCTTTTTTTTTTATAGCACCCCGTTAATTATGGCAACTAATCTAGAAAGCTGCACTTCACACTGTCTATGCTCTAGGCTGATTGGACACGGCACTGTTACTGCTGTGCCCTTAGAGAGAATTAGTGGTCCAAAAATTTCAGAGATGTATTTGCTTGTTAAACTGTTTACTATAGCAGTTTATGGTAAAGGTTTGGGCATTATGAAAAAATAGTTTGAAATAACACCATTGTCCGTTACATGTAACGAAAGAAAAATCTTTTGGAAGTCAGCATAGATCCCACAATGGCAACATTTCGCAGGTTGAGGTTAATTCTAACCGACGCGTCACTACTAGGAATGCATGGAATCCAAAACCTTAAAGGAAAACTATACCCCCAAACAACATCGGTCTCTAAAGAGAGTGCATAAAACAACTCGTGTGTAAAACCCTGATTCATGTAAATAAACCATTTTCATAATAAACTTTTCTAATATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001001198\|small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus (Silurana) tropicalis] MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGNVAAAAAAATASIAGAPTPYAAGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGMPPGRGGPMGMPPPGMRPPPPGPPPPGMRPTRP	Refseq >NP_001089822\|small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus laevis] MTVGKSSKMLQHIDFRMRCTLQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGNVVAAATASIAGAPTQYAAGRGGLLPPMGRGAPPPGMMGPPPGMRPPMGPPMGMPPGRGGPMGMPPPGMRPPPPGPPPPGMRPARP

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.4482	Xl.55882 [+] Xl.77344
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SNRPB
mouse		MGI	Snrpb	All(4) Targeted, other(4)
zebrafish		ZFIN	snrpb

Publications
First:		Organization of the mitochondrial genome of Atlantic cod, Gadus morhua. [Nucleic Acids Res 1990]
Most recent:		Correlation between physicochemical and ecotoxicological approaches to estimate landfill leachates toxicity. [Waste Manag 2011]
		View All Papers

Functional Ontologies
GO: Molecular:
Biological:		mRNA processing
Cellular Component:		nucleus ribonucleoprotein complex small nucleolar ribonucleoprotein complex
EC:
KOG:		[K] U1 snRNP component

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.4482.1.S2_at [+] Str.4482.1.S1_at Str.25438.1.A1_at	Xl.2487.1.S1_at
Affymetrix 2.0			Xl2.55882.1.S2_at [+] Xl2.55882.1.S1_at

Symbol legend[+]