kcnd1 Summary [species: Xenopus laevis and Xenopus tropicalis]

Summary

Expression

XB-GENEPAGE-6047564

[provisional- machine annotated only]

Gene Symbol: kcnd1 [Predicted: Source is Human Entrez Gene]

Gene Name: potassium voltage-gated channel, Shal-related subfamily, member 1 [Predicted: Source is Human Entrez Gene]

Synonyms: kv4.1 Add Xenopus synonyms

Gene Function: Voltage-gated A-type K+ channel KCND

Interactants: kcnd2(8) , kcnd3(8) , kcna4(5) , kcnb1(5) , kcnc4(4) , dpp6(2) , kcna5(2) View All

XB-GENE-6047565

Molecules	tropicalis	laevis
Gene	JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1
	Entrez Gene
mRNA	NCBI Nucleotide >XM_002943935\|PREDICTED: Xenopus (Silurana) tropicalis potassium voltage-gated channel subfamily D member 1-like, transcript variant 1 (LOC100488387), mRNA ATGGCGGCCGGGGTGGCTACCTGGCTCCCTTTTGCTCGGGCAGCAGCAGTGGGATGGCTTCCTCTGGCAAAGAGGCCTATGCCCAAACCTCCCAGTGACAAACGCATGAAAAGTGATGAGATTCTGGTGGTGAATGTGAGTGGCAGGAAATTCCAGACCTGGAAAAACACCCTTGACCGCTACCCGGACACCCTGCTGGGCAGCACCGAGAAAGACTTCTTCTTCAACCAAGACACCCAGGAATACTTTTTTGACCGCGACCCTGAGATGTTCCGGCACATCCTGAACTTTTATCGCACCGGCAAGTTGCACTACCCCCGCCACGAGTGCATCCAGGCCTTTGATGAGGAACTGTCCTTCTACGGCATTATTCCCGAAATCATAGGAGACTGTTGCCTAGAAGAGTATCGAGACCGCAAGAAGGAGAACCTGGAGCGGCTGGCAGAGGACACAGAAGCAGAGACAGCCGGTGACACCCCGTTGCCCCCTGACAGCACCTTCCGCCAAAGACTCTGGAGGGCCTTTGAGAACCCTCACACCAGCACCATGGCTCTTGTCTTCTATTACGTGACTGGTTTTTTCATAGCTGTGTCAGTCATTGCCAATGTGGTGGAAACAGTGCCCTGCCGCCCCCCAGCAGGGCGCTTGAAGGAACTACCGTGTGGGGAGAAATATAATTTGGCTTTTGTCTGTATGGATACGGCCTGTGTCCTTATCTTCACCTTTGAGTACCTCATGCGCCTGTTTGCGGCTCCGAGCCGCTGTAAATTTATGCGCAGTGTCATGAGTATCATCGATGTTGTGGCCATCATGCCCTTTTACATTGGTCTGGTAATGCCAGAGAATGAGAACGTCAGCGGTGCCTTTGTCACTCTTCGAGTTTTCCGCGTCTTCCGTATTTTTAAGTTTTCCCGTCACTCGCAGGGGCTGCGCATCCTCGGCTACACGCTGAAGAGCTGCGCCTCTGAGCTTGGTTTCCTGCTCTTTTCCCTCACCATGGCCATCATCATCTTTGCCACTGTTATGTTTTATGCAGAGAAGGGGACAAGCAAGACCAAATTCACCAGCATCCCTGCAGCCTTCTGGTATACCATCGTCACCATGACAACCCTAGGGTACGGCGATATGGTTCCGGACACTATAGCAGGGAAGATATTTGGATCTATCTGTTCGCTCAGTGGGGTTCTGGTCATTGCCCTGCCCGTCCCAGTCATTGTCTCAAACTTCAGTCGCATCTACCATCAGAACCAGAGAGCTGACAAGCGCCGGGCACAGCAAAAAATCCGACTCGCCCGAATCCGACTGGCAAAAAGTAACACTACAGGCGCCTTCCTGCGCTACAAGGAGAGCGGCGGCCTGGAGGAGGGCACTGAGAGCCACGCCCTGTGTGTGAAGAATCGGTCAGCGTTTGAGCTACAACATCATCACCTCCTGCACTGCCTGGAGAAGACCACATGCCACGAGTTCACAGATCAGCACACGTACAGCGAAGCTCTCATGACCGAATCCATTGGCTACCGGACCAGCCGCAGCACTTCAGTCTCCTCCCAGCAAGGCTTTGGCACATCGTGCTGCCCGCGCCGGAACAAGCGGCGTGCCATCCGCCTTGCAAACTCCACCGTCTCTGTCAGTCGTGGCAGCATGCAGGAGCTGGAAACTCTACATGTGCACAAGGGTCTCTCCCAAAGCCGCTCCAGCCTTAATGCCAAAACGCACGGGAACATGAAGCTGAATTGTGAGACATCGGACCTTACGGCCGCCATCATTAGCATTCCCACCCCCCCGGCCAACAGCCCAGATGAGAGTCAGCCCTCCTCCCCGAGCTCTGGGGTCCTGAGAAACTCCAGCATCACAGCCAGATACTACCAGGAAACCGTCCGGATCTCCAGCCTGTAG
Protein	NCBI Protein >XP_002943981\|PREDICTED: potassium voltage-gated channel subfamily D member 1-like isoform 1 [Xenopus (Silurana) tropicalis] MAAGVATWLPFARAAAVGWLPLAKRPMPKPPSDKRMKSDEILVVNVSGRKFQTWKNTLDRYPDTLLGSTEKDFFFNQDTQEYFFDRDPEMFRHILNFYRTGKLHYPRHECIQAFDEELSFYGIIPEIIGDCCLEEYRDRKKENLERLAEDTEAETAGDTPLPPDSTFRQRLWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCRPPAGRLKELPCGEKYNLAFVCMDTACVLIFTFEYLMRLFAAPSRCKFMRSVMSIIDVVAIMPFYIGLVMPENENVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGTSKTKFTSIPAAFWYTIVTMTTLGYGDMVPDTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQQKIRLARIRLAKSNTTGAFLRYKESGGLEEGTESHALCVKNRSAFELQHHHLLHCLEKTTCHEFTDQHTYSEALMTESIGYRTSRSTSVSSQQGFGTSCCPRRNKRRAIRLANSTVSVSRGSMQELETLHVHKGLSQSRSSLNAKTHGNMKLNCETSDLTAAIISIPTPPANSPDESQPSSPSSGVLRNSSITARYYQETVRISSL

Genomic	tropicalis
Genome Browser	Xenbase	Xenbase JGI Ensembl UCSC

Synteny	Metazome

Expression	tropicalis	laevis
UniGene
Unigene EST Profile
GEO data		GEO
Images	0 expression image(s) for tropicalis and laevis

Orthology	MOD	Entrez Gene	Genetic Phenotypes	Morphants
human	OMIM:Gene, HGNC	KCND1
mouse	MGI	Kcnd1	All(1) Targeted, knock Out(1)
zebrafish

Publications
First:		Identification of molecular components of A-type channels activating at subthreshold potentials. [J Neurophysiol 1994]
Most recent:		JZTX-XIII, a Kv channel gating modifier toxin from Chinese tarantula Chilobrachys jingzhao. [Toxicon 2012]
		View All Papers

Functional Ontologies
GO: Molecular:		cation channel activity ion channel activity potassium channel activity More[+] protein binding voltage-gated potassium channel activity
Biological:		cation transport ion transport potassium ion transport
Cellular Component:		membrane voltage-gated potassium channel complex
EC:
KOG:		[P] Voltage-gated A-type K+ channel KCND

Reagents	tropicalis	laevis
Clones

Affymetrix 1.0	StrEns.11399.1.S1_at
Affymetrix 2.0

Symbol legend[+]