ubc Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (2)

Nucleotides (2758)

Interactants (1)

XB-GENEPAGE-6066016

[provisional- machine annotated only] Gene Symbol: ubc [Predicted: Source is Human Entrez Gene] Gene Name: ubiquitin C [Predicted: Source is Human Entrez Gene] Synonyms: hmg20, ubiquitin C Add Xenopus synonyms Gene Function: Interactants: ccnb1.2(1) , View All

XB-GENE-6066017

XB-GENE-6066520

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001006687\|Xenopus (Silurana) tropicalis ubiquitin C (ubc), mRNA CTTTAGCAACGGTGCAGCTTGGAGGTAACTGGTTGAGATTCGTGCAGGACCGGATCGGCAGCAAACATGCAGATATTTGTGAAAACGCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCAAGTGACACTATTGAAAATGTGAAGGCTAAAATACAGGATAAAGAAGGCATTCCTCCAGATCAACAAAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGAACCTTATCAGACTATAACATCCAAAAGGAATCCACTCTGCATTTGGTTCTCCGTTTGAGAGGTGGGATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGTGATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGGGATGCAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGTGACACAATTGAAAATGTAAAGGCGAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAACATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGGGATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAGTGACACAATTGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCAGAACCCTGTCAGATTACAATATTCAGAAAGAATCCACCCTACATTTGGTTCTTCGTCTCAGAGGTGGGATGCAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGAGCCAAGTGATACTATTGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAGCAGAGATTGATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGGGATGCAAATATTTGTGAAAACACTGACAGGGAAGACCATTACTCTTGAAGTAGAGCCAAGTGATACCATTGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATCCCTCCTGACCAACAGAGATTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACCCTCTCAGACTACAATATTCAAAAAGAATCCACCCTGCACTTAGTTCTACGTCTCAGAGGTGGGATGCAAATATTTGTGAAGACCTTAACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGTGACACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAGCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAACATTCAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGAGGTGGGATGCAGATTTTTGTCAAGACCCTGACTGGGAAGACCATTACTCTTGAAGTTGAGCCCAGTGACACAATTGAGAATGTAAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAGCAGAGATTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGATTACAACATTCAGAAAGAATCCACCCTGCACCTGGTCCTGCGTTTGAGGGGTGGGGTTTAAAACAATCATTATGCATCTGCTCTGCATTACTTGCTTGTTGCACTTTGTTTCAATAAAGCTATTGCATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001087396\|Xenopus laevis ubiquitin C (ubc), mRNA GTGGCGCAGTTGCACTTTGACAGCGGTGTAGTGCAGAGCAGAGGGATTAAGTTGAATTTCGCGCAGGACCGACAGACCAGCAAACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCAAGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGACCAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTATAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGGCATGCAGATATTTGTGAAGACCTTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCTAGTGACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAGCAGAGATTGATTTTTGCTGGTAAGCAACTGGAAGATGGTCGCACTCTTTCTGACTACAACATTCAAAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGGAATGCAAATATTTGTCAAGACCTTAACTGGGAAGACAATTACTCTTGAGGTTGAGCCTAGCGATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAACAAAGATTGATCTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTGTCTGATTACAATATTCAGAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGGGATGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGTGATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAATATACAGAAGGAATCTACTCTGCACTTGGTCCTTCGTCTCAGAGGTGGGATGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGTGATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAATATACAGAAAGAATCAACCCTGCATTTGGTTCTCCGTCTGAGAGGTGGGATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGTGACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAGCAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAACATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGGAATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAGTGACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAATATTCAGAAGGAATCCACTCTGCACTTGGTCCTTCGTCTCAGAGGTGGGATGCAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAGCCCAGTGACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAACAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAACATACAGAAAGAATCCACCCTCCACCTGGTCCTGCGTTTGAGGGGTGGGATTTAGGACAATCTGTTATGCATCTGCTCTGCATTACTTGCTTGTTGCACTTTTGTTTCAATAAAGATATTGCATTCCAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001006688\|ubiquitin C [Xenopus (Silurana) tropicalis] MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV	Refseq >NP_001080865\|ubiquitin C [Xenopus laevis] MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny

Expression		tropicalis	laevis
UniGene		Str.70193 [+] Str.11542 Str.43870 Str.45520 Str.49945 Str.53539 Str.68371 Str.68410 Str.68673 Str.84075 Str.84313 Str.84501 Str.72826	Xl.76279 [+] Xl.56594 Xl.76895 Xl.77262 Xl.80766 Xl.58774 Xl.14767
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	UBC
mouse		MGI	Ubc	All(1) Gene Trapped(1) Targeted, knock Out(1)
zebrafish		ZFIN	ubc

Publications
First:		Crystal structure of the cyclin-specific ubiquitin-conjugating enzyme from clam, E2-C, at 2.0 A resolution. [Biochemistry 1999]
Most recent:		In-cell NMR spectroscopy of proteins inside Xenopus laevis oocytes. [J Biomol NMR 2006]
		View All Papers

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.49945.1.A1_at [+] Str.49945.1.A1_x_at Str.37585.1.S1_at Str.8038.2.S1_x_at Str.43386.1.A1_x_at Str.43870.1.A1_at Str.43870.1.A1_x_at Str.44008.1.A1_at Str.8038.1.S1_x_at Str.8038.1.S1_a_at Str.45520.1.A1_at Str.11542.1.A1_at Str.11542.1.A1_x_at	Xl.20449.1.S1_at [+] Xl.18559.1.S1_x_at Xl.5846.10.S1_at Xl.18559.2.S1_x_at Xl.18559.2.S1_a_at
Affymetrix 2.0			Xl2.20449.1.S1_at [+] Xl2.56594.2.A1_a_at Xl2.56594.1.S1_x_at Xl2.29264.1.S2_at Xl2.14767.1.A1_at Xl2.29264.1.S1_at

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