tpm2 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

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Nucleotides (819)

Interactants (0)

XB-GENEPAGE-6071380

[provisional- machine annotated only] Gene Symbol: tpm2 [Predicted: Source is Human Entrez Gene] Gene Name: tropomyosin 2 (beta) [Predicted: Source is Human Entrez Gene] Synonyms: DA1, DA2B, TMSB, AMCD1, nem4 Add Xenopus synonyms Gene Function: Actin filament-coating protein tropomyosin Interactants:

XB-GENE-6071381

XB-GENE-6255765

XB-GENE-6255811

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001030416\|Xenopus (Silurana) tropicalis tropomyosin 2 (beta) (tpm2), mRNA GCCCGGAGTCTCCGCTTCTCCCCTCTCTCTGTGCCGGTCGCTCGCTGAGTCGCAGTCGCAGCCATGGACGCGATTAAGAAGAAGATGCAGATGCTGAAGTTGGACAAGGAGAATGCGATCGATCGCGCTGAGCAGGCGGAGGGCGACAAGAAGCAGGCGGAGGATCGCTGCAAGCAGATAGAGGAGGAGGTGATGGCTCTGCAGAAGAAGACAAAATCCACCGAGGACGAAGTGGAGAAATATTCCGAGTCGGTGAAGGAAGCTCAGGAGAAGCTGGAGATGGCGGAGAAGAAGGCCACGGACGCTGAGGCGGAAGTGGCATCTTTGAACAGGCGCATCCAGCTGGTAGAGGAGGAGTTGGACCGCGCTCAGGAACGTCTCGCCACCGCTCTGCAGAAACTGGAAGAGACAGAGAAAGCCGTGGATGAGAGCGAGAGAGGAATGAAGGTCATTGAGAACAGGGCCACCAAGGATGAGGAGAAGATGGTGGACCAAGAGCAGCAGCTGAGAGAGGCTAAAAACATAGCAGAGGAGTCAGACCGCAAGTATGAGGAGGTTGCCCGTAAACTTGTCGTCCTTGAGGGGGACCTGGAGCGTTCTGAAGAGAGAGCTGAGGTGGCCGAGAGTCGGCTCAGGCAGTTGGAAGAGGAACTTCGGACCATGGATCAGAATCTGAAATCTCTAATTGCAGCAGAGGAAGAGTATGCATCAAAAGAAGACAAATATGAAGATGAAATAAAACTGCTGTCTGAGAAGCTAAAAGAAACTGATGGACGAGTTGAGTTTGCTGAGAAATCTGTGGTTAAACTTGAGAAAACCATCGATGATCTGGAAGAGAACCTGTCGGCGGCTAAAGAGGAGAGCATTGAGCTGAACCAGACTCTGGACCAGACTTTACTGGAGCTGAACAACATGTAATTGTCCCACTGAGATCCCAGTATCACTTTTGGGCTCCGGGTAATGACTGCACTTTGTACTGAAACGGATCTCTTTGTGTCACCCCCCCCCCAGTATCTGCAGCTGGACCCCCACTCACCTTCATACTGGAGAGAAGCTTCTCCATCTTCACTAACCCCAGACTTGATACTGTGTAACGGCCTCGCTTTCCAGCACTGAATGCAGCTTAATCTGTAATTGCAGCACTTACTGCCCCCCCCCCCCAAATATTTACTGTACCCCTCATGCAAACCCCACACTGAGCTCAACCCAACACTCTAGGAGAAAAAACATGAAATGCAGGTAGTGTAACCCCAAGTGCCAGCCATAAGCAGGGACAGATGGCAAGCTCATAGGCCCAGGCACCTGAGTATCCAGGGAAAGTAACCTCTGACTGGGCCACAATCTGCCATAGAAGGAAACAAACGGAAGGGCTACAAGGGATCCAGTCCAGAAAGTCCTATTCCATTTATTATTCTTTGAGATAAAATAATAAAGTGCATTAATTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001089246\|Xenopus laevis tropomyosin 2 (beta) (tpm2-a), transcript variant 2, mRNA TCTTGTGTCTCAGTCCCGGAGTGTCAGTCGCAGTGATGGAGGCGATTAAGAAGAAGATGCAGATGCTGAAGTTGGAGAAGGAGAATGCGATTGATCGAGCGGATCAGGCCGAGGCGGATAAGAAACAGGCGGAGGATCGGTGCAAACAGATAGAGGAGGAGGTGATGGATTTGCAGAAGAAGACAAAAGGCACCGAGGATGAGGTGGAGAAATATTCTGAGTCAGTGAAGGATGCTCAGGAGAAGTTGGAGATGGCGGAGAAGAAGGCCACTGACGCTGAGGCTGAAGTAGCATCCTTGAACAGGCGCATCCAGCTGGTAGAGGAAGAGTTGGACCGCGCTCAGGAACGTCTTGCGACCGCTCTGCAGAAACTGGAAGAAACAGAGAAAGCAGTGGATGAGAGCGAGAGAGGAATGAAGGTCATTGAGAACAGGGCCACCAAGGATGAGGAGAAGATGGTGGACCAAGAGCAGCAGCTGAGAGAAGCTAAAACCATAGCAGAGGAATCAGACCGCAAGTATGAGGAGGTGGCCCGTAAGCTTGTCGTCATTGAGGGGGACCTTGAGCGTTCTGAAGAGCGAGCTGAGGTGGCTGAGAGTCGGTTCAGGCAGTTGGAAGAGGAACTTCGGACCATGGATCAGAGTCTGAAATCTGTAATTGCAGCAGAGGAAGAGTATTCTTCAAAGGAAGACAAATATGAAGAGGAGATCAATCTGCTGACTGAGAAGCTAAAAGAAGCTGAGAGTCGAGTTGAGTTTGCTGAGAAATCTGTGGTTCAACTAGAGAAGACCATCGATGATCTGGAAGAGAGCCTGACTGCTGCTAAAGAAGAGAAAATTGAACTGAACCAGACCCTGGACCAGACATTAGTGGAGCTGAACAACATGTAGATGTTCCCAATGTTCCTTCACGTCCTCCCTCTTGTCCTCACTTCTGAGCTCCATGTAATGACTGCACTTTGTATGAAATGGATCTCAACAATGTGTCACAACATTCCCTGATCACATTCCCAGTATCTGCAGCTGGACCCTCACTCACCCTCGTACTTCATCCTGGAGAAAAGCTTCTTTATCTTCCTCAACTAGACTTTTATACTGTAACGTCCTCATTGTGCAGCTTGTTGTGTGGTTGCAGCACTTAATGTCCCCCCTATTGTTTCCTTCATGTAAACCCCACGCTGAGCTCAAACCAACACTCCAGGAGCCAAAACATTAAATACAGGTAAGTAGGGATGGGCGAATTTGACCTGTTTCGTTTCGCCAAAAATTCACCGCCGGTGAAATGTCGCAGACAGGCATTAAAGTCTATGGGCGTCAAAATTTTTTTGTTGTGCGGCAAATTTTTTTGACGTGTGTCTTATTTTTTTTGACGCACAACGCCATACAAGTCTATGGGCGTAAATTTATTAGCGAAACAAGGTGAAAAAAATTCGCCCATCCTTACAGGTAAGGCCTTAATCGGTGACAGATGGCAAGCTCATATGCCCAGGCCTGAGTTTGGATTCCCCACGGCAACTGTATGTTTCAGATGAATGGGGGACAGAGAGGTAATGTCTGACCAATTACGTGTTGCTTTAAGGCAAAGAATGAAAGGCCTACGAGGGAATCTGCCCAGTCTATTCCATATTATTATTCCTTGAGATAAACAAATAAAGTGCATTGATTTAATTTAAAAAAAAAAAAAAAAAA		Refseq >NM_001171947\|Xenopus laevis tropomyosin 2 (beta) (tpm2-b), transcript variant 2, mRNA TCTCCGCTTTTTCTCTCTGTCCCGGTCGCTCTCGGAGTCGCAGTCGCAGCTATGGACGCGATTAAGAAGAAGATGCAGATGCTGAAGTTGGACAAGGAGAATGCGATTGATCGCGCGGAACAGGCCGAGGCGGATAAGAAACAGGCGGAGGATCGCTGCAAGCAGATAGAGGAGGAGGTGTTGGCTATGCAGAAGAAGACCAAGGGCACAGAGGATGAGGTGGAGAAATATTCGGAGTCAGTGAAAGATGCTCAGGAGAAGCTGGAGATGGCGGAGAAGAAGGCGACTGACGCTGAGGCTGAAGTAGCATCTTTGAACAGGCGCATCCAGCTGGTAGAGGAAGAGTTGGACCGTGCTCAGGAACGTCTTGCCACCGCTCTGCAGAAACTGGAAGAAACAGAGAAAGCAGTGGATGAGAGCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCACCAAGGATGGGGAGAAGATGGTGGACCAAGATCAGCAGCTGAAAGAAGCTAAAACCATAGCAGAGGATTCAGACCGCAAATATGAGGAGGTGGCCCGTAAGCTTGTCGGCATTGAGGGGGACCTGGAGCGTTCTGAAGAGCGAGCTGAGGTGGCTGAGAGTCGGTTCAGGCAGTTGGAAGAGGAACTTCGGATCATGGATCAGAGTCTGAAATCTCTAATTGCAGCAGAGGAAGAGTATTCATCAAAGGAAGACAAATATGAGGAGGAGGTCAATCAGCTGACTGAGAAGCTAAAAGAAGCTGAGAGTCGGGTTGAGTTTGCTGAGAAATCTGTGGTTAAACTAGAGAAGACCATTGATGATCTGGAAGAGAGTCTGACTGCTGCTAAAGAAGAGAAAATTGAACTTGACCAGACCCTGGACCAGACATTAGTGGAGCTGAACAACATGTAGATGTTCCCACTATTCCTTGAAGTCCTCCCCCCTGTCCTCACTTCTGTGCTCCATGTAATGACTGCACTTTGTATGAAACGGATCTGTTTGTATCACAACATTCCCTGATCACATTCCCAGTATCTGCAGCTGGACCCTCACTCACCCTCGTACTTCATCCTGGAGAAAAGCTTCTTCATCTTCCTCCTCCCAATTTAGACTTTATACTGTAACGGCCTCAGTTTGCAGCACTGATTGCAGCACTTACTGTCCCCCAACATTTACCCTTCATGCAAACCCCACACTGAGCTCACTCCAACACTCCAGAAGCCGAAACATAAAATGCAGGTAGTGTTCACCAAGGCCGGCCTTAATCATTGACAGATTGCAAGCTCATAGGCCTAGTCCTGAATTTATAGTCTCCAGGGCCAACCGTATGTTACAGATGAATGGGGGGGGCAGAGACTTACTACATGTTGCTCTAGGAAGGCAAAGAATTGAAAGGCTACTGGGAAACCTCCAGTCTCTAGTGAGTAACTAATTATTATTCTTTGAGATAAACGAATAAAGTGCA
Protein		Refseq >NP_001025587\|tropomyosin 2 [Xenopus (Silurana) tropicalis] MDAIKKKMQMLKLDKENAIDRAEQAEGDKKQAEDRCKQIEEEVMALQKKTKSTEDEVEKYSESVKEAQEKLEMAEKKATDAEAEVASLNRRIQLVEEELDRAQERLATALQKLEETEKAVDESERGMKVIENRATKDEEKMVDQEQQLREAKNIAEESDRKYEEVARKLVVLEGDLERSEERAEVAESRLRQLEEELRTMDQNLKSLIAAEEEYASKEDKYEDEIKLLSEKLKETDGRVEFAEKSVVKLEKTIDDLEENLSAAKEESIELNQTLDQTLLELNNM	Refseq >NP_001082715\|tropomyosin 2 a isoform 2 [Xenopus laevis] MEAIKKKMQMLKLEKENAIDRADQAEADKKQAEDRCKQIEEEVMDLQKKTKGTEDEVEKYSESVKDAQEKLEMAEKKATDAEAEVASLNRRIQLVEEELDRAQERLATALQKLEETEKAVDESERGMKVIENRATKDEEKMVDQEQQLREAKTIAEESDRKYEEVARKLVVIEGDLERSEERAEVAESRFRQLEEELRTMDQSLKSVIAAEEEYSSKEDKYEEEINLLTEKLKEAESRVEFAEKSVVQLEKTIDDLEESLTAAKEEKIELNQTLDQTLVELNNM		Refseq >NP_001165418\|tropomyosin 2 b isoform 2 [Xenopus laevis] MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQIEEEVLAMQKKTKGTEDEVEKYSESVKDAQEKLEMAEKKATDAEAEVASLNRRIQLVEEELDRAQERLATALQKLEETEKAVDESERGMKVIENRATKDGEKMVDQDQQLKEAKTIAEDSDRKYEEVARKLVGIEGDLERSEERAEVAESRFRQLEEELRIMDQSLKSLIAAEEEYSSKEDKYEEEVNQLTEKLKEAESRVEFAEKSVVKLEKTIDDLEESLTAAKEEKIELDQTLDQTLVELNNM

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene			Xl.21893		Xl.28919 [+] Xl.82593
Unigene EST Profile			EST Profile		EST Profile
GEO data			GEO		GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	TPM2	OMIM:601680 OMIM:161800 OMIM:108120
mouse		MGI	Tpm2	All(1)
zebrafish		ZFIN	tpm2

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:		[Z] Actin filament-coating protein tropomyosin

Reagents		tropicalis	laevis a		laevis b
Clones			open biosystems		open biosystems
			geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.5526.1.S1_at [+] Str.5526.3.A1_a_at	Xl.21893.1.S1_at [+] Xl.930.1.A1_at		Xl.938.1.S1_at
Affymetrix 2.0			Xl2.930.1.S1_at [+] Xl2.21893.1.S1_at		Xl2.28919.1.S1_at [+] Xl2.938.1.S1_at

Symbol legend[+]