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Summary Expression Gene Literature (8) GO Terms (7) Nucleotides (46) Proteins (17) Interactants (161) Wiki
XB-GENEPAGE- 483232

Gene Symbol: sox18

Gene Name: SRY-box 18

Synonyms: xSox18alpha , xSox18beta , xsox18 , sox18-a , sox18-b
Add Xenopus synonyms , Nomenclature history


Gene Function: HMG-box transcription factor

Protein Function:
Probable transcription factor. Binds to the consensus DNA sequence 5'-AACAAT-3'. Also binds 5'-CACAAT-3' and 5'-AATAAT-3' with similar affinity.


Interactants: YYY

OMIM Disease Associations: HYPOTRICHOSIS-LYMPHEDEMA-TELANGIECTASIA SYNDROME; HLTS
1/2
 
Xenbase Gene ID XB-GENE-483233 XB-GENE-864957 XB-GENE-6251810
Gene Symbol sox18 sox18.L sox18.S
Chromosome scaffold_7759 chr9_10L chr9_10S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0
Entrez Gene
Entrez Gene
Entrez Gene
mRNA Refseq Refseq Refseq
Protein Refseq Swiss-Prot Refseq Swiss-Prot TrEMBL Refseq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v7.1 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.78926 Xl.11958 Xl.11959
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 4 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine sox18 sox18.L sox18.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards SOX18 OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Sox18 MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
sox18 ZFIN Ensembl
chicken
GEISHA SOX18 Ensembl
fruit fly
worm
WORMBASE
Publications
First: Molecular cloning and characterization of human SOX17. [Int J Mol Med 2002]
Most recent: Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. [Dev Biol 2017]
View All Papers 2 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 6 terms 5 terms 7 terms
EC
PANTHER sox18
KEGG Pathways K09270 K09270 K09270
KOG [K] HMG-box transcription factor
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones     EXRC - 1 clone(s)
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience Source BioScience
Morpholino sox18 MO1 sox18 MO1 sox18 MO1
ORF sox18 ORF1
Affymetrix 1.0 Xl.11958.1.S1_at Xl.11959.1.S1_at
Affymetrix 2.0 Xl2.11958.1.A1_at Xl2.11959.1.S1_at

Symbol legend[+]

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