sox15 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (22)

Nucleotides (406)

Interactants (137)

XB-GENEPAGE-6458181

[provisional- machine annotated only] Gene Symbol: sox15 [Predicted: Source is Human Entrez Gene] Gene Name: SRY (sex determining region Y)-box 15 [Predicted: Source is Human Entrez Gene] Synonyms: sox20, sox26, sox27, sox-d, soxd, xsoxd Add Xenopus synonyms Gene Function: Interactants: sox3(10) , tubb2b(8) , myc(7) , snai2(7) , sox2(7) , neurod1(6) , neurog2(6) View All	1/3

XB-GENE-6455809

XB-GENE-6252630

Molecules		tropicalis	laevis
Gene			JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001126574\|Xenopus (Silurana) tropicalis uncharacterized LOC100145022 (LOC100145022), mRNA GAGGGGAGAGTGCGGAGTCGGGAGTTGGGGGCTCAGAGAGAGACATTCCCGGCCATGCACCCTCCCCAGCACTCCGCTCCCCCCGCTCCCCCCGCTCCCCCCAACGAGAGCCCCCTGGTCAAGCGGCCCATGAACGCCTTTATGGTCTGGTCCAGCGGGGAGAGAAAGCGCATGTCCGCCCGGCACCCCAAGATGCACAACTCGGAGATCAGCCGCCGCCTGGGGGAGATATGGCGGGGCCTGGGGGAGGACGAGCGGAGACCCTTCCGGGAGGAGGCCAAGCGGCTCCGGGCTCAGCATGCTATAGACTACCCGGGCTACAAGTACGCGCCCCGCAAGAAGCGCAAGGAGAGGGGGGAGCCCCCCAAAGTGGCCCCTCAGGCCCCCCTGCCCTGCCCCCCCGGCTCCTCGCCCCCCCGGGACCCCCAGCTGCACCCCCCGCCGCCTCCTACTCACTACAACGGCTTCCAGGATGGATACGGGTACCTGCCCTACCCCTGCCCCCCCCGCCCGGAGCCCTTTCTGCCCTCAGTGAGTGACGTGTCGGCGCTTTACGGCTTCGGACTGTACGATTACGGGGAGCACAGGGGGGCCCCCCAGCAGGTTCAGTACCAGACACTGGAAGTGGACGGAACCTCGTTCACTGACCTCTGACCCCTGTGAGTGCGAGGGTCTCGGCAGGACCACCAGGAGGCGCTTGACTCCCCCGCGTGGGGACCTTTCAGGGAATGGGGGGTCCCGCTGTGACAGGTGCATGATGGGATTCTCACCTGTCAGGACCTGCCCCCGCATAGGACCTTAATGCAGTGATGGGGCTGTACCAAGTGGCCTTATTGGGAGGGGGGGATGCACTCAATGACTTTCCTTGTACAAGGGCTCCCCCTCCTGGCAGCTATGGGGATTTCATTACTTGATTCCGTTACAGTAATTATTAGGGGGGGGGGGGTGACGTCGGACTTTCCTAGAATTGAAGGTTTTTGTGTTTTTAGGGCAATTTGGGGGGTTTTGTCGCAAACACTGTCGTCCGGATCCTTTTATATCAGAGACTTCATTCAAACTGGAATTTATTGTGTTTTTCTAGAAATGTTTTTATTACTATAAAGGTACTAGCTGAAAAAAAAAAAAAAAAAA	Refseq >NM_001087732\|Xenopus laevis Sox-D protein (sox-d), mRNA GGTTTAGGAGCAGCAGAGCTGTGATTGGCCCCGGGGCGGCGGAGGAGGAGGGGGAGGGGAGAGTGAGGGGCACAGGGTGAGGGGCTGCCGGACTGATCAGTTGGACCCAGGCTTCTCCTCACTGACTCCTCATGTCTCCGACCCACGATCCCCCCGGGAATCCCCCGAAGGAGAGCGGCCTAGTGAAGCGGCCAATGAACGCCTTTATGGTTTGGTCGAGCGGCGAGAGGAAGCGCATGTCCGCCCTGCACCCCAAGATGCACAACTCCGAGATTAGTCGCCGACTCGGGGAGATCTGGCGCGGCCTCGGGGAGGAGGATCGGAGACCTTTCCGGGAAGAGGCGAAGAGACTTCGGGCTCAACACGCGATAGACTTCCCGGGATACAAGTACGCGCCCCGCAAGAAACGCAAAGACAAGGGGGGGGAGCTCGCGAGCAACAGACACACGCCGACCCCTCCTGCTGCTCCCCGACCCCCAGCGCTCTCTCCCCCCACCGACCCACAACTGCAGCAGCAACAGCAGCCCCAGTACAGCGGATACCAGGAGCTCTATGGGTACCTCCCCTACCCCCCGCGCCCGGAGTCCTTCCTCCCGTCTGTCAGTGACGTGTCTGCGCTTTATGGCTTTGGACTGTACGATTACGGGGAGCACAGGGGGGTTCAGCAACAGGTCCAGTACCAAACCCTGGAAGTGGAGGGAACCTCTTTCACGGACCTCTGACCCCTGTGACTGAATGGGACATTCCGAGGGTCTCCGCTCTACTGACTTGAGAATCTAGGGGATCCCACTGTGAGGGGTGCATGATGGGATGGACCTGACCCCGCCTTCACTGAAACCCCAGGACCTTAATAGAGGTGTGGCCCTAGTGGGCGGTACCAAGTGGCCTTATTGTGGAGGCTCCTCCCCCTGCCGGCAGCTATGGGCATTTCATTATTCCGTTACTGGAAAAGATTTGGGGCGTCGGATCTTGTTAGAATTAAAGGTTTTTGTTTTTAGGGAAACTTGGGACGTTTTTGTCGCACACACTGTGACCCCCATTCTTTTTATAGCAAAGACTTTACTGAAACTGGAGTTTGTTGTTTTTCTAGTGATGTTTTTAATACTATAAAGTTCTAGATGAATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001120046\|uncharacterized protein LOC100145022 [Xenopus (Silurana) tropicalis] MHPPQHSAPPAPPAPPNESPLVKRPMNAFMVWSSGERKRMSARHPKMHNSEISRRLGEIWRGLGEDERRPFREEAKRLRAQHAIDYPGYKYAPRKKRKERGEPPKVAPQAPLPCPPGSSPPRDPQLHPPPPPTHYNGFQDGYGYLPYPCPPRPEPFLPSVSDVSALYGFGLYDYGEHRGAPQQVQYQTLEVDGTSFTDL	Refseq >NP_001081201\|Sox-D protein [Xenopus laevis] MSPTHDPPGNPPKESGLVKRPMNAFMVWSSGERKRMSALHPKMHNSEISRRLGEIWRGLGEEDRRPFREEAKRLRAQHAIDFPGYKYAPRKKRKDKGGELASNRHTPTPPAAPRPPALSPPTDPQLQQQQQPQYSGYQELYGYLPYPPRPESFLPSVSDVSALYGFGLYDYGEHRGVQQQVQYQTLEVEGTSFTDL

Genomic		tropicalis
Genome Browser					Xenbase

Synteny

Expression		tropicalis	laevis
UniGene		[+] Str.10799 Str.45763	Xl.1150 [+] Xl.80413
Unigene EST Profile			EST Profile
GEO data			GEO
Images		22 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SOX15
mouse		MGI	Sox15	All(3) Targeted, knock Out(3)
zebrafish

Publications
First:		SoxD: an essential mediator of induction of anterior neural tissues in Xenopus embryos. [Neuron 1998]
Most recent:		Specific domains of FoxD4/5 activate and repress neural transcription factor genes to control the progression of immature neural ectoderm to differentiating neural plate. [Dev Biol 2012]
		View All Papers 9 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:

Reagents		tropicalis	laevis
Clones		EXRC - 1 clone(s)
			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0		Str.8895.2.A1_at [+] Str.45763.1.A1_at	Xl.1150.1.S1_at
Affymetrix 2.0			Xl2.1150.1.A1_at

Symbol legend[+]