ybx1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (9)

Nucleotides (8239)

Interactants (10)

XB-GENEPAGE-480745

Gene Symbol: ybx1 Gene Name: Y box binding protein 1 Synonyms: FRG Y, frog Y-box proteins, yb1, bp-8, csdb, dbpb, yb-1, csda2, nsep1, nsep-1, mdr-nf1, frg y1 Add Xenopus synonyms Gene Function: transcription factor Interactants: ybx2(6) , mlc1(2) , egfr(1) , hsp70(1) , jun(1) , lgals4(1) , myh4(1) View All

XB-GENE-480746

XB-GENE-865405

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016677\|Xenopus (Silurana) tropicalis Y box binding protein 1 (ybx1), mRNA CGGGAGCGGAGAGCGGACAGCAGGGAGCTCGAAAGGCAGCAGCCCCACCGCCGGCCTGAGTTACCATCAACACCCCGGGGGGAAGTTAAAGCGAGCCAACCGCCGGCCCGAGTCACCACCTCCGAAAGCAGCCAACTTACACCATCAAAGACACAATGAGCAGCGAGGTTGAAACACAACAGCAGCAGACAGTCGCATTGGAGGGCAAGGCCGGCCAGGAACCGGCGGCCACCGTGGGGGAGAAGAAGGTCATCGCAACCAAGGTTTTGGGTACGGTCAAATGGTTTAATGTGCGCAATGGTTACGGCTTCATTAACAGGAATGACACCAAGGAAGATGTGTTTGTACACCAAACTGCCATCAAGAAGAATAACCCTAGGAAGTACCTTCGCAGTGTGGGAGATGGTGAAACTGTTGAGTTTGATGTAGTGGAGGGTGAAAAGGGTGCAGAGGCAGCTAATGTAACTGGTCCAGGGGGTGTTCCAGTCCAAGGCAGCAAATATGCAGCAGACCGTAATCATTTCAGGCGCTATCAGCGTCGCAGAGGTCCTCCACGTAACTACCAGCAAAATTACCAAAATAATGAAAGTGGAGAGAAGACAGAAGGGAATGAGAGTGCACCTGAAGGAGAGGGGGGTTCAAATCAGCAACGTCCATACCGCAGGAGACGTGTTCCACCATACTACTTGCGGAGACCATATGGGCGCAGACCACAATACTCAAATGCTCCTATTCAGGGAGAAGGTGCAGAGGGATCAGATGGTCAAGGTTCTTCACAAGGTGATCAAGGTAGACCTGTGCGACAGAATATGTACAGAGGCTTCAGACCACGATTTCGCAGGGGACCACCACGGCAGAGACAACCCAGAGAAGAAGGAAATGAAGAGGACAAAGAAAATCAGGGGGATGAAACCCAGAGTCAGCAGGCACCTCAACGTCGGTATCGCCGTAACTTTAACTACAGACGCAGACGCCCAGAAAACCCTAAACCACAAGATGGTAAAGAGACCAAGGCAGCCGAAACATCAGCTGAGAACACGTCCGCTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAAATACCGGCTTACCAACTCTACCACCATCCGGTTTTTTGTCATCAAAATGTCAAGACAGAAATTCCAGCAATAAGAAATGAACAAAGAATTGGAACTGAAGACCTTAAGTGCTTGCTTTTTGCTCTTGACCAGATAACTTCATCCTGCATGGGTAAATGCAGAGATGGTTTTTATGTTTTTTTTTCTAAAAGCTCCTTTTGGGAATGAAAATTTTTTAAAAACATATTTTTTCTCAATGTACCTTTCAAAGGTTTTTAAATTGTTTCCTATCTGGTCAAACTAAGATTTTTAAGAACCTCATTTTTAATTTGTAATAAGCGTACACCTAATTTTTTTCAAGAGTCAACAAACTGCAAGCATCTGTTAATAAAGGTCTCAACATAAAAAAAAAAAAAAAAAA	Refseq >NM_001085898\|Xenopus laevis Y box binding protein 1 (ybx1), mRNA GGAGAGAAGAGCGGACAGTAGGGAGCTCGAAAGGCAGCAGCCCCACCGCCGGCCTGAGTTACCATCAACACCCCGGGGGGAAGTTAAAGCGAACCAACCGCCGGCCCGAGTCACCACCTCCGAAAGCAGCCAAACTTACACCATCAAAGACACAATGAGCAGCGAGGTTGAAACACAACAGCAGCAGCCAGACGCATTGGAGGGCAAGGCCGGCCAGGAACCGGCGGCCACCGTGGGGGATAAGAAGGTCATCGCCACCAAGGTTTTGGGGACAGTCAAATGGTTTAATGTGCGCAATGGTTACGGCTTTATTAACAGGAATGACACCAAGGAAGATGTGTTTGTACACCAAACTGCCATCAAGAAGAATAACCCTAGGAAGTACCTTCGCAGTGTGGGAGATGGTGAAACTGTTGAGTTTGATGTAGTGGAGGGTGAAAAGGGTGCAGAGGCAGCTAATGTAACTGGTCCAGAGGGTGTTCCAGTCCAAGGCAGCAAATATGCAGCAGACCGTAATCATTACAGGCGCTATCCACGTCGCAGAGGTCCTCCACGCAACTACCAGCAAAATTACCAAAACAACGAAAGTGGAGAAAAGGCAGAGGAGAATGAGAGTGCACCAGAAGGAGACGATTCAAATCAACAGCGTCCATACCACAGAAGGCGTTTCCCACCATACTACACACGGAGACCATATGGACGCAGACCTCAATACTCCAATGCTCCTGTTCAAGGAGAGGAAGCAGAGGGAGCAGATAGCCAAGGTACAGATGAACAAGGCAGACCTGCGAGACAAAATATGTATAGAGGCTTCAGACCACGATTTCGCAGGGGACCCCCGCGACAGAGACAACCTAGAGAGGAAGGAAATGAGGAGGACAAAGAAAATCAGGGGGATGAAACCCAGAGTCAGCCACCACCTCAACGTCGGTACCGCCGTAACTTTAACTACAGACGCAGACGCCCAGAAAACCCTAAATCACAAGATGGTAAAGAGACCAAGGCAGCCGAAACATCAGCTGAGAACACGTCCACTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAAATACCGGCTTACCAACTCTACCACCATCCGGTTTTTTGTCATCAAAATGTCAAGACAGAAATTCCAGCAATAAGAAATGAACAAAGAATTGGAACTGAAGACCTTAAGTGCTTGCTTTTTGCTCTTGACCAGATAACTTCATCCTGCATGGATAACTGCAGAGATGGTTTTTGTTTTTTATCTAAAAAGCTCCTTTTGGGAATGACAATTTTTTAAAAAAAACATTTTTTCTCAATGTACCTTCAAAGGTTTTTAAATTGTTTCATATCTGGTCAAACTAAGATTTTTAAGAACCTCATTTTTAATTTGTAATAAGCGTACACCTAATTGTTTTTCAAAAGTCAACAAACTGCAAGCATCTGTTAATAAAGGTCTTCACATTAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016677\|Y box binding protein 1 [Xenopus (Silurana) tropicalis] MSSEVETQQQQTVALEGKAGQEPAATVGEKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHFRRYQRRRGPPRNYQQNYQNNESGEKTEGNESAPEGEGGSNQQRPYRRRRVPPYYLRRPYGRRPQYSNAPIQGEGAEGSDGQGSSQGDQGRPVRQNMYRGFRPRFRRGPPRQRQPREEGNEEDKENQGDETQSQQAPQRRYRRNFNYRRRRPENPKPQDGKETKAAETSAENTSAPEAEQGGAE	Refseq >NP_001079367\|nuclease-sensitive element-binding protein 1 [Xenopus laevis] MSSEVETQQQQPDALEGKAGQEPAATVGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNNESGEKAEENESAPEGDDSNQQRPYHRRRFPPYYTRRPYGRRPQYSNAPVQGEEAEGADSQGTDEQGRPARQNMYRGFRPRFRRGPPRQRQPREEGNEEDKENQGDETQSQPPPQRRYRRNFNYRRRRPENPKSQDGKETKAAETSAENTSTPEAEQGGAE UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.47687 [+] Str.52535 Str.11626 Str.43684 Str.44708 Str.46341 Str.47323 Str.54134 Str.69517 Str.85110	Xl.2633 [+] Xl.19667
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	YBX1
mouse		MGI	Ybx1	All(5) Targeted, knock Out(4) Gene Trapped(1)
zebrafish		ZFIN	ybx1	2 Lines(s)

Publications
First:		Xenopus Y-box transcription factors: molecular cloning, functional analysis and developmental regulation. [Proc Natl Acad Sci U S A 1990]
Most recent:		Requirement of the protein B23 for nucleolar disassembly induced by the FRGY2a family proteins. [J Biol Chem 2006]
		View All Papers

Functional Ontologies
GO: Molecular:		DNA binding nucleic acid binding
Biological:		regulation of transcription, DNA-dependent
Cellular Component:
EC:
KOG:		[J] Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.8793.1.S1_at [+] Str.8793.1.S1_x_at Str.4009.1.A1_at Str.28306.1.S1_at Str.26448.1.A1_at Str.26389.1.A1_at Str.26389.1.A1_x_at Str.26321.1.A1_at Str.26042.1.A1_at Str.51881.1.A1_at Str.24927.1.A1_at Str.25163.1.A1_at Str.25007.1.A1_at Str.43531.1.A1_at Str.43684.1.A1_at Str.43807.1.A1_at Str.43921.1.A1_at Str.44016.1.A1_at Str.44368.1.A1_at Str.44368.1.A1_x_at Str.44428.1.A1_at Str.44708.1.A1_at Str.46235.1.A1_at Str.46256.1.A1_at Str.46396.1.A1_at Str.46341.1.A1_at Str.46476.1.A1_at Str.46653.1.A1_at Str.46795.1.A1_at Str.47323.1.A1_at Str.11539.1.A1_at Str.11539.1.A1_x_at	Xl.57.1.S1_s_at [+] Xl.19667.1.A1_at
Affymetrix 2.0			Xl2.19667.1.A1_at

Symbol legend[+]