krt5.4 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (0)

Nucleotides (1206)

Interactants (0)

XB-GENEPAGE-876589

Gene Symbol: krt5.4 Gene Name: keratin 5, gene 4 Add Xenopus synonyms Gene Function: fibrous structural protein Interactants:

XB-GENE-876590

XB-GENE-876600

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001172563\|Xenopus (Silurana) tropicalis keratin 6 (krt6), mRNA ACATCTCCTTCGTCTTACCTGTTCTTTTAAGATTCTGATTTTCCCTTTAAACTGCTTTAATTTAAAGCCGTCATGTCTTTCTCACAAGTCTCTGTCAAGAAGCACCATAGTGGTAGTGGTGGTGGTGGAAGAGGGGGTTTTAGCGCTTGCTCACTTGGAGCAATTGGAGGAGGATCTCGGTCTGGAGGTAGCTATGGGTCACGCAGTGTCTATAACCTTGGTGGAAAATCTAGAACTTCCATAAGTGCAGCCAGTACTCGAAGTATGGCAGGAGGACTTGGTAGTGCTGCTGGAGGAGGATTTGGTAGCGCTGCTGGTGGAGGATTTGGTAGTGCTGCTGGTGGAGGATTTGGTGGTGGTGCTGGTGGAGGATTTGGTGGTGGCTTTGGAGGAGGACATGGTGGTGGTGCAGGGGGCATGGGTGGCATGGGAGGCCCAGGATTTGATGGAGGGGATATGGGATTCCCTGTTTGCCCACCTGGTGGAATTCAGCAGGTTACTATCAATACACAACTTCTGCAGCCACTTAATCTGACTATAGATCCAAACGTCCAGAAAGTAAAAACAGAGGAAAGAGAACAAATTAAAACTCTCAACAACAAGTTTGCAGCTTACATTGACAAGGTCAGATTTCTGGAACAGCAAAACAAAGTCCTAGAAACAAAATGGAAACTGCTGCAGGAACAGGGAACTAAGGGCAGCACCAAAAGGGCCAACCTAGAGCCCCTGTTTGAGAAATACATTGGCGACCTGAACAAATATTTAAGCACTCTAATAAATGAAAAGGACCGTTTGACTCAAGAACTGAAGAATCTGCAAGTTCTTGTAGAGGATTATAAGAAAAAATATGAGGACGAAATTACCAAGCGTACAAAAGCAGAAAACGATTTTGTGTTACTTAAGAAGGATGTTGATACTGTCTACATGGCTAAAACAGAACTTGAGGCCAAGGTGGATGCAGTGACAAGTGAAATCAACTTCTTAAGAACTCTTTATGCTGCGGAATTGTCACAGGTACATGATACCGTCACCGACACCTCTGTTGTTCTGACTATGGATAACAACCGTGACTTGAACCTGGAAGGTATCATTAAGGATGTTAAAGCACAATTAGAACTATGTGCACAAAGAAGCAAAATGGAAGCTGAAGCATTGTTTGATAATAAGTACAAGGAGCTGCAGAAAACAGCTGAAGGACACGGGGACAGCATAAAGAATTCCAAATCTGAAATAGCAGAACTGAACCGTAGGATTCAGAGGCTGAAGGCTGAAATTGAAAATATCAAGAAGCAGATTGCAGGTCTGAATCAATCCATTGCTGGAGCTGAAGAAAAGGGCAACCTTGCTCTCAAGGATGCAGAAAAGAAACTTCAGGATCTTGAAGCTGCTGAAAAGAAACTTAAGGAGGACATGGCTCGTCAGCTTAAAGAGTACCAAGAACTTCTGGCTGCTAAGATTGCACTGGATGTTGAAATTGGCACTTACGGACTCATGCTGGGAGGAGAAGAGCACAGAATGTCTGGAGATATTGTCAGCAACGTCAGCATATCTGTAATCAGCGGAGGTGCCAGTGTATACAGCGCTCTTGGTGCTGCAGCAGGCGGAATGGGAGGAGGTGGAATGGGAGGAGGCATGGGATCTGGCCACGGTGGTGGATATGGCCACGGAGGAGGCTTTGGATCCGGCCATGGATCCGGCCACGGAGGAGGCTTTGGAGCAGGCCATGGATCCGGCCACGGAGGAGGCCACGGCAAAACCTCAGTGGCAATTGCATCAACAACATCCACGTCTAAGAAATCCTATTAATTTAGAGCAGCAATAGCCAAGCAAAAAAGCCACATATAACTACACCTTTGCCTAACTATTTGAACCTTGACTAGTATGTAATTATTGTGTCACCCTACATCTATAACTGTTTTAATTTCCATCATAAACACAGTGCTTCCTTATAACACAATCATATCATGTCTTTGTATATTGTGTCATAAATTGTCACTGGAAAGAAGACAAGGAGGCCATCAAGTTCAGATAAAAAGTACTAATTTGTTTGTGAAATAAATACAACATCAAAAAGCAATATAAACAACTTGAAAGCAACTTATCACGCAGAAATCTTAGGCACTGGTATGGAGGTAATTGTGAATCTCTATACTAGAAACAAGTTGAGAAGATCTACAGTATATCTACTTTTATCCTGCTTGACTTATCTGAGAGGAAAGGGGATCATGGGTGTTTGTATATAGTATCTTTTTAATGCATTGCTGCATTTTGATAAACCATTCTAGAACGTCTTTCCTTTTCTTTTTATCTTCAATAAACTGCATTTGGATCTCAAAAAAAAAAAAAAA	Refseq >NM_001135064\|Xenopus laevis keratin 5, gene 4 (krt5.4), mRNA AAATCTCCTTCGTCTTATCTGTCCCTTCAAATTTCTGATCTTCTCTGTTAACTGCTTTAATCCAAAGCCACTATGTCTTTCTCCCAAGTCTCCATCAAGAAGCGGCACACTGTTAGCAGTGTTGGTGGTGGTGGTGGTGGAATGGGGGGTTTTAGTGCATGCTCGCTTGGAGGAACTGGAGGAGGATCTCGGGCTGGAGGTGGCTTTGGGTCACGCAGTCTTTATAACCTTGGTGGAAAATATAAAACTTCCATAAGTGCAGTCAGTACTCGGGCAGGAGGACTTGGTAGTGCTGCTGGTGGAGGATATGGTGGTGGCTTTGGAGGTGGACAGGGTGGTGGCTTTGGAGTAGGACAAGGTGGTGGTTTTGGAGGTGGACAAGGTGGCGGGTTTGGTGGTGGGTTTGGTGGCGGTTTTGGTGGTGCAGGGGGCATGGGTGGCAGGGGTGGTGGAGGCATGGGAGGCATGGGTGGAATGGGTGGAATGGGAGGCCCAGGATTTGATGGAGGGGATATGGGATTCCCAGTTTGCCCACCTGGTGGAATCCAGCAGGTTACTATCAATTCACAACTTCTGCTACCACTTGATCTGGCTATAGATCCAGCAATCCAGAAAGTAAAAGCAGAGGAAAGAGAACAAATTAAAACTCTCAACAACAAGTTTGCAACTTTCATTGACAAGGTCAGATTTCTGGAACAGCAAAATAAAGTCCTGGAAACAAAATGGAAACTGTTGCAGGAACAGGGCACTAAGGGCACCACCAAAAGAGCCAACCTAGACCCCCTGTTTGAGAAATACATTGCCGACCTGAAGAAATATTTAGATAATTTAATAAGTGAAAAGAGTCGTTTGCAGCAAGAACTGAAGAATCTGCAACTTCTTGTAGAGGACTATAAGAAAAAATATGAAGATGAAATTAACAAGCGTACAAAAGCAGAAAACGATTTTGTGGTACTTAAGAAGGATGTTGATGCTGCCTACATGGTGAAAACTGAACTTGAGGCCAAAGTGGATACACTGACAAGTGAAATCAACTTCTTAAGAACTCTTTATGCTGCAGAATTGTCTCAGGTACACGATCAAGTCACCGACACCTCAGTTGTTCTGACTATGGATAACAACCGTGACTTGAATCTGGATAGCATCATTAAAGAAGTTAAATGTCAGTATGAACAAATTGCACAAAGAAGCAAATTGGAAGCTGAAGCATTGTACGATCAAAAGTACAAGCAGCTGCAGCAAACAGTTGAAGGACATGGTGACAGCATAAAGAATTCCAAGACTGAAATATCAGATCTGAACCGTAAGATCCAGAGGCTGAAGGCTGAAATTGAAAATGTCAAGAAACAGATTGCATCTCTGAATCAATCCATTGCTGGGGCTGAGGAACGTGGAAACCTTGCTCTCAAGGACGCAGAAAAGAAACTTAAGGATCTTGAAGATGCTGAAAGGAAACTTAAAGCAGACATGGCTCGTCAGCTTAAGGAATACCAAGAACTTATGTCTGCTAAGCTTGCTCTGGACCTTGAAATTAGCACTTACAGATACATGCTGGAAGGAGAAGAGGGCAGAATGTCTGGACAGATTGTAAACAATGTCAGCATATCTGTTCTCAGTGGAGGCTCAAGTGTATACACTGCTCTTGGCGGTGCAGCAGGCGGAATGGGAGGTGGTGGCGGCGGCGGCATGGGATCTGGCCACGGTGGTGGATATGGCGGCATGGGAATTGGAGGCGGCATGGGATGCGGCATGGGAGACGGAATGGGAGGTGGCGGAATGGGAGGTGGCATGGGATCTGGCCACGGTGGTGGATATGGCCATGGAGGAGCTGCATGCTTCGGAGCTGGAGGAATGGGATATGAAGGTGGATCCATGCATGGAGGAGGAAGCTCATATGGCCATTCTGGAGGCAAAACCTCAGTGGCAATTGCATCAACAACATCCACATCCAAGAAAACCTATTAATTTACAGCGATAGCCACACCTTAAAGCCACAGATCACTACACTTTTGCCTAACTAACATTGAGTAGTTTGTAATGATTGTGTCATTTACATCTGTTCCTGTTTCAATTTCCATCATAAATATCCAAGAAAACAGGTTTCCAATCATGCAAGTCATGATTGCATCTAGTTCTGTAAATTTCCGCTTAACTTTTAGCTGAGAGGAAAGGGGAGCCTGGGTGTTTGTACATAGCTTCCTCTTAAATGCGTTGCTGCATTTTCCTAAAATGTTCTAGAACTTTTCTTTGCATCTTCAATAAACTGCATTTGGATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001166034\|keratin 6 [Xenopus (Silurana) tropicalis] MSFSQVSVKKHHSGSGGGGRGGFSACSLGAIGGGSRSGGSYGSRSVYNLGGKSRTSISAASTRSMAGGLGSAAGGGFGSAAGGGFGSAAGGGFGGGAGGGFGGGFGGGHGGGAGGMGGMGGPGFDGGDMGFPVCPPGGIQQVTINTQLLQPLNLTIDPNVQKVKTEEREQIKTLNNKFAAYIDKVRFLEQQNKVLETKWKLLQEQGTKGSTKRANLEPLFEKYIGDLNKYLSTLINEKDRLTQELKNLQVLVEDYKKKYEDEITKRTKAENDFVLLKKDVDTVYMAKTELEAKVDAVTSEINFLRTLYAAELSQVHDTVTDTSVVLTMDNNRDLNLEGIIKDVKAQLELCAQRSKMEAEALFDNKYKELQKTAEGHGDSIKNSKSEIAELNRRIQRLKAEIENIKKQIAGLNQSIAGAEEKGNLALKDAEKKLQDLEAAEKKLKEDMARQLKEYQELLAAKIALDVEIGTYGLMLGGEEHRMSGDIVSNVSISVISGGASVYSALGAAAGGMGGGGMGGGMGSGHGGGYGHGGGFGSGHGSGHGGGFGAGHGSGHGGGHGKTSVAIASTTSTSKKSY	Refseq >NP_001128536\|keratin 5, gene 4 [Xenopus laevis] MSFSQVSIKKRHTVSSVGGGGGGMGGFSACSLGGTGGGSRAGGGFGSRSLYNLGGKYKTSISAVSTRAGGLGSAAGGGYGGGFGGGQGGGFGVGQGGGFGGGQGGGFGGGFGGGFGGAGGMGGRGGGGMGGMGGMGGMGGPGFDGGDMGFPVCPPGGIQQVTINSQLLLPLDLAIDPAIQKVKAEEREQIKTLNNKFATFIDKVRFLEQQNKVLETKWKLLQEQGTKGTTKRANLDPLFEKYIADLKKYLDNLISEKSRLQQELKNLQLLVEDYKKKYEDEINKRTKAENDFVVLKKDVDAAYMVKTELEAKVDTLTSEINFLRTLYAAELSQVHDQVTDTSVVLTMDNNRDLNLDSIIKEVKCQYEQIAQRSKLEAEALYDQKYKQLQQTVEGHGDSIKNSKTEISDLNRKIQRLKAEIENVKKQIASLNQSIAGAEERGNLALKDAEKKLKDLEDAERKLKADMARQLKEYQELMSAKLALDLEISTYRYMLEGEEGRMSGQIVNNVSISVLSGGSSVYTALGGAAGGMGGGGGGGMGSGHGGGYGGMGIGGGMGCGMGDGMGGGGMGGGMGSGHGGGYGHGGAACFGAGGMGYEGGSMHGGGSSYGHSGGKTSVAIASTTSTSKKTY

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene			Xl.80378 [+] Xl.81366 Xl.81408 Xl.81409
Unigene EST Profile			EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	KRT5	OMIM:179850 OMIM:131960 OMIM:131800
mouse		MGI	Krt5	All(4) Targeted, knock Out(3)
zebrafish		ZFIN	krt5

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:		structural molecule activity
Biological:
Cellular Component:
EC:
KOG:		[DY] Nuclear envelope protein lamin, intermediate filament superfamily

Reagents		tropicalis	laevis
Clones			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0			Xl.25017.1.S1_at [+] Xl.17440.1.S1_at
Affymetrix 2.0			Xl2.57099.2.S1_a_at [+] Xl2.57099.2.S1_at Xl2.17440.1.S1_at

Symbol legend[+]