neurod1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (102)

Nucleotides (134)

Interactants (296)

XB-GENEPAGE-963756

Gene Symbol: neurod1 Gene Name: neuronal differentiation 1 Synonyms: XNeuroD, neurod, neuroD Add Xenopus synonyms Gene Function: helix-loop-helix transcription factor Interactants: neurog1(32) , neurog2(31) , tubb2b(30) , notch1(24) , dll1(14) , pax6(13) , sox2(13) View All	1/8

XB-GENE-963757

XB-GENE-6252655

XB-GENE-963762

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001097399\|Xenopus (Silurana) tropicalis neurogenic differentiation 1 (neurod1), mRNA TAATAATAGTCCCAGCTCTGCACAGAAACCCTACTCTGTAGCACTGAGGGGTATGAGACGGTCACTGGCAAGGAGAACTGCACCCAAGATCTGAAAATGACCAAATCCTATAGAGAGAATGGGCTGATTATGGCCGAGACTCCAGGCTCCAGAGGATGGGTGGATGAATGTCTGAGCTCTCAGGATGAACACGATCTAGAGAAAAAGGAGGGAGAGTTGGACAGTCTCATGAAAGAAGATGATGAGGATTCGCTGAATCATCACAATGGAGAGGAGAACGAGGAAGAGGATGAAGTGGACGATGAAGAGGAGGAGGACGACGACGATGAAGATGATGAGGATGACGATGACCAAAAACCCAAAAGACGAGGACCGAAAAAGAAAAAAATGACGAAAGCCCGGGTGGAGCGATTTAAAGTCAGACGCATGAAAGCAAACGCCAGAGAGAGGAATCGCATGCACGGACTCAACGCCGCGCTGGACAATCTGCGCAAAGTCGTGCCCTGCTACTCCAAAACCCAAAAGTTGTCAAAGATCGAAACTCTGCGCCTGGCTAAGAACTACATTTGGGCTCTCTCCGAGATTCTACGGTCCGGCAAAAGCCCCGACTTGGTGTCCTTTGTGCAAACGCTCTGCAAAGGTTTGTCGCAGCCCACAACTAATCTAGTAGCTGGGTGCCTACAGCTGAACCCCAGAACTTTCCTTCCTGAGCAGAGCCAGGATATCCCATCACATATGCAAGCAAGCAGCGCTTCCTTCCCCCTGCACCCATTCCCCTACCAGTCCCCGGGTCTTCCTAGCCCTCCCTATGGTACCATGGACAGCTCCCATGTATTCCACGTTAAGCCGCACTCCTATGGCTCAGCCCTGGAGCCCTTCTTTGACAGCACCGTAACTGACTGTACCAGCCCATCATTTGATGGCCCCCTTAGCCCACCCCTTAGTGTTAATGGGAACTTTACTTTTAAACATGAGCCTTCTGCGGAGTACGATAAAAACTACGCGTTCACTATGCACTATCCTGCGGCCACTATGGCAGCAGCAGCCCAGGGCCACGGATCATTGTTCTCCACTGGGGCTCCGCGCTGTGAAATCCCAATAGACAGCATGATGTCCTATGAGGGTCACTCCCACCACGAAAGAGTAATGAGTGCCCAGCTTAATGCCATCTTTCACGATTAACCCTTGGAAGATCAAATGAATGAAACTCATGTAACTGACTGTGCTTTGACAAGACTGTCTTGTTTACAAGGGCAGACACTTGGGTCGCAGAAGTGCAAATGCCCCACTCTGGTGTGACACACTTGATCTTACTGCCTTTAGATACGGGAACCTGCAGTTCCACCTAATGTATTATTTCCCACCTCTATCCAATCGCCACTCCCTAAATTCGGAGTGCAACGATCTATGACATCGTGTCATTTATCCGATCCAGATATAAAAAAAAAAAAAAAAAAA	Refseq >NM_001085794\|Xenopus laevis neurogenic differentiation 1 (neurod1-a), mRNA GATCTAAAAAATGACCAAATCGTATGGAGAGAATGGGCTGATCCTGGCCGAGACTCCGGGCTGCAGAGGATGGGTGGACGAATGCCTGAGTTCTCAGGATGAAAACGATCTGGAGAAAAAGGAGGGAGAGTTGATGAAAGAAGACGATGAAGACTCACTGAATCATCACAATGGAGAGGAGAACGAGGAAGAGGATGAAGGGGATGAGGAGGAGGAGGACGATGAAGATGATGATGAGGATGACGACCAGAAACCCAAAAGGCGAGGACCGAAAAAGAAAAAAATGACGAAAGCCCGGGTGGAGCGATTTAAAGTGAGACGCATGAAGGCAAACGCCAGGGAGAGGAATCGCATGCACGGACTCAACGATGCCCTGGACAGTCTGCGCAAAGTTGTGCCCTGCTACTCCAAAACACAAAAGTTGTCTAAGATTGAAACTCTGCGCCTGGCTAAGAACTACATCTGGGCTCTTTCTGAGATTTTAAGGTCCGGCAAAAGCCCAGACCTGGTGTCCTTTGTACAAACTCTCTGCAAAGGTTTGTCGCAGCCCACCACCAATCTAGTAGCGGGGTGTCTGCAGCTGAACCCCAGAACTTTCCTTCCTGAGCAGAGTCAGGACATCCAGTCGCACATGCAAACAGCGAGCTCTTCCTTCCCTCTGCAGGGCTATCCCTATCAGTCCCCTGGTCTTCCCAGTCCCCCCTATGGTACCATGGACAGCTCCCATGTATTCCACGTCAAGCCTCACTCCTATGGGGCGGCCCTGGAGCCTTTCTTTGACAGCAGCACCGTCACTGAGTGTACCAGCCCGTCATTCGATGGTCCCCTGAGCCCACCCCTTAGTGTTAATGGGAACTTTACTTTTAAACACGAGCATTCGGAGTATGATAAAAATTACACGTTCACTATGCACTATCCTGCAGCCACTATATCCCAGGGCCACGGACCATTGTTCTCCACGGGGGGACCACGCTGTGAAATCCCAATAGACACCATCATGTCCTATGACGGTCACTCCCACCATGAAAGAGTCATGAGTGCCCAGCTAAATGCCATCTTTCATGATTAACCCTTGGAAGATCAAAACAACTGACTGTGCATTGCCAGGACTGTCTTGTTTACCAAGGGCAGACACGTGGGTAGTAAAAGTGCAAATGCCCCACTCTGGGGCTGTAACAAACTTGATCTTGTCCTGCCTTTAGATATGGGGAAACCTAATGTATTAATTCCCACCTCCTTCCAATCGACACTCCTTTAAATT		Refseq >NM_001092127\|Xenopus laevis neurogenic differentiation 1 (neurod1-b), mRNA CGGACGCGTGGGGAGACAGTCACTGCCAAGGAGAACTACAAGCAAGATCTAAAAATGACCAAATCGTATGGAGAGAATGGGCTGATCCTGGCCGAGACCCCAGGCTCCAGAGGATGGGTGCAAGAATGCCTGAGCTCTCAGGGTGAACACGATCTAGAGAAAAAGGAGGGCGAGATGGAGAGTGTCATAAAAGAAGACGATGAAGACTCACTCAAGAATCCAAATGAAGAGGAGAACATGGAAGAGGATGAAGGGGACGAGGAGGACGAGGACGATGATGATGAGGATGATGAGGATGATGACCAGAAACCCAAAAGACGAGGACCGAAAAAGAAAAAAATGACCAAAGCCCGGGTGGAGCGATTTAAAGTGAGACGCATGAAGGCAAACGCCAGGGAGAGGAATCGCATGCACGGACTCAACGACGCCCTGGACACTCTGCGCAAAGTTGTGCCCTGCTACTCCAAAACACAAAAGTTGTCTAAGATTGAAACTCTTCGCCTGGCTAAGAACTACATCTGGGCTCTTTCTGAGATTTTAAGGTCGGGCAAAAGTCCAGACCTGGTGTCCTTTGTACAAACTCTCTGCAAAGGTTTGTCGCAGCCCACCACCAATCTAGTAGCGGGGTGTCTGCAGCTGAACCCCAGAACTTTCCTTCCTGAGCAGAGTCAGGATGTGCCGTCGCATATGCAAGTAGCGAGCTCTTCCTTCCCTCTGCACCCCTATCCCTATCAGTCCCCTGGTCTTCCCAGTCCTCCCTATGGTACCATGGACAGCTCCCATGTATTCCACGTCAAGCCTCACTCCTATGGGGCGGCCCTGGAGCCCTTCTTTGACAGCAGCACCGTCACTGACTGTACCAGTCCGTCATTCGATGGTCCTCTGAGCCCACCCCTTAGTGTTAATGGGAACTTTACTTTTAAACACGAGCCTTCTTCGGAGTATGATAAAAACTACATGTTCACTATGCACTATCCTGCAGCCACTATATCCCAGGGCCACGGATCATTGTTCTCCACTGGAGCACCACGTTGTGAAATCCCAATAGACACCATCATGTCCTATGACGGTCACTCCCACCACGAAAGAGTCATGAGTGCCCAGCTAAATGCCATCTTTCACGATTAACCCTTGGAAGATCAAACGAATTTATCTGTGCATTGCCAGGACTGTCTTGTTTACAAAGGGCAGACACTTGGGTAGTAGAAGTGCAAATGCCCCACTCTGGTGTAAGAAACTTTATCTGTCTTTACTATGGGGACCTGCAGTTCCACCTAATGTATTATTTCCCACCTCTATCCGATTGCCACTCCTTAAATTCGGGAACGTGTTATTTATCTGAACCAGATATATATAATAATAAAAAAAAAACAATAATCACAAGCAATAATTAGGATCTATGCAATTTTTTTTCAACGAATAGTGGGCCAATTAAAGAAATATATATATAGAAATATATTTTTCAACCGACATTTTCCTACTTGTTATTGTACCCATGCCGAATCATTTTCTTGTGATTTTTTTTTTTGTACAGGATTTTTAATGAACTTTTTATAATGTAAATGTTCCTATTTTATGAAAAAAAAACAGCTCCATCAATTTTTTTTATACATAAGGAAAGTAGAATTATATCTAATTTATACGAAATACGTTTAACTGATTTAAACCAGCAACAAAGTGCTTAGAAAGTTGTGTTGCCTTAGAGACAAAAACACACACTAATTCTAAACAAAATATTCTTGCAATGGTTTCTTTTTTTTGGTAGATTCCATTCTATTTCTGCAAAATTCTACAAAAGTCATCAGTAATGATTCTTTTTCCAAATAAATGCTGCTTGACTATCATAAACATATTTGCACTTTGTCCTTTTATTTTGCGTCGTTATTTTAGACAAAATATTTGAATAACTAAAACCTTCTTTCCAAAATATGTTCTAACAGGTTCTATTGCACCTATTAATGGTGATTGAATTGCGTGTGGGTTATACTCAATTGTCCCTTTAATGCAGTAGTCGCAACCAATGGCAACCTTATAATAGAATCGGTGGATAGCGTCATAGATATCGCATGTTAATTCAGTGCAAATTATAAGCGCTGTTTCAAGTGTATTGCTGGGTCACATGGAATTGATTTTGTGCTGTCATCTTGTTTGTAATCATGTCTATGCTATAATGTACTGCACACTGGAGGCTCAGAGCACACAGGTTCATCTGAAGTGATACTTTTGGTGAAAATATTGCATTTCTTCTTTAATATGTTTTTTTTTTTTCTGGACCGTATGCAATTCCTATGGGATTGGTGCATTGTTTATTATTTGTAGAATAAAATGATTAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001090868\|neurogenic differentiation 1 [Xenopus (Silurana) tropicalis] MTKSYRENGLIMAETPGSRGWVDECLSSQDEHDLEKKEGELDSLMKEDDEDSLNHHNGEENEEEDEVDDEEEEDDDDEDDEDDDDQKPKRRGPKKKKMTKARVERFKVRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQSQDIPSHMQASSASFPLHPFPYQSPGLPSPPYGTMDSSHVFHVKPHSYGSALEPFFDSTVTDCTSPSFDGPLSPPLSVNGNFTFKHEPSAEYDKNYAFTMHYPAATMAAAAQGHGSLFSTGAPRCEIPIDSMMSYEGHSHHERVMSAQLNAIFHD	Refseq >NP_001079263\|neurogenic differentiation factor 1 [Xenopus laevis] MTKSYGENGLILAETPGCRGWVDECLSSQDENDLEKKEGELMKEDDEDSLNHHNGEENEEEDEGDEEEEDDEDDDEDDDQKPKRRGPKKKKMTKARVERFKVRRMKANARERNRMHGLNDALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQSQDIQSHMQTASSSFPLQGYPYQSPGLPSPPYGTMDSSHVFHVKPHSYGAALEPFFDSSTVTECTSPSFDGPLSPPLSVNGNFTFKHEHSEYDKNYTFTMHYPAATISQGHGPLFSTGGPRCEIPIDTIMSYDGHSHHERVMSAQLNAIFHD UniProtKB		Refseq >NP_001085596\|neurogenic differentiation 1 [Xenopus laevis] MTKSYGENGLILAETPGSRGWVQECLSSQGEHDLEKKEGEMESVIKEDDEDSLKNPNEEENMEEDEGDEEDEDDDDEDDEDDDQKPKRRGPKKKKMTKARVERFKVRRMKANARERNRMHGLNDALDTLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQSQDVPSHMQVASSSFPLHPYPYQSPGLPSPPYGTMDSSHVFHVKPHSYGAALEPFFDSSTVTDCTSPSFDGPLSPPLSVNGNFTFKHEPSSEYDKNYMFTMHYPAATISQGHGSLFSTGAPRCEIPIDTIMSYDGHSHHERVMSAQLNAIFHD

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.12084	Xl.330		Xl.26304
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		57 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	NEUROD1	OMIM:125853
mouse		MGI	Neurod1	All(5) Targeted, knock Out(1) Targeted, other(3)
zebrafish		ZFIN	neurod

Publications
First:		Conversion of Xenopus ectoderm into neurons by NeuroD, a basic helix-loop-helix protein. [Science 1995]
Most recent:		Post-translational modification of Ngn2 differentially affects transcription of distinct targets to regulate the balance between progenitor maintenance and differentiation. [Development 2012]
		View All Papers 15 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:		[K] Transcription factor NeuroD and related HTH proteins

Reagents		tropicalis	laevis a		laevis b
Clones			EXRC - 2 clone(s)
		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.12084.1.A1_at	Xl.330.1.S1_at		Xl.7578.1.A1_at
Affymetrix 2.0			Xl2.330.1.S1_at		Xl2.26304.1.S1_at [+] Xl2.7578.3.S1_at Xl2.7578.3.S1_a_at Xl2.7578.1.A1_at

Symbol legend[+]