ddx39a Summary [species: Xenopus laevis and Xenopus tropicalis]

Summary

Expression

XB-GENEPAGE-966446

[provisional- machine annotated only]

Gene Symbol: ddx39a [Predicted: Source is Human Entrez Gene]

Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Predicted: Source is Human Entrez Gene]

Synonyms: bat1, ddxl, bat1l, ddx39 Add Xenopus synonyms

Gene Function: ATP-dependent RNhelicase

Interactants: ddx39b(2) , Pcna Ab3(1) , adam23(1) , alpl(1) , aurka(1) , col8a1(1) , dnaja2(1) View All

XB-GENE-966447

XB-GENE-966454

Molecules	tropicalis	laevis
Gene	JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
	Entrez Gene	Entrez Gene
mRNA	Refseq >NM_001016000\|Xenopus (Silurana) tropicalis DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (ddx39a), mRNA TCCTTTCTCCCTCACGTCCAGCGAATCGCGTATAGCAAGTGGCGGGAGCTGGTGTTGCGTGTGGCCAATCAGCGGCGGGGGGAGGAGCCTTGCGTTACTAGGCCTTGTCTTCTTGGGCCGGTGGGTTCGGTCGGGGCGCGCACACGTGGAGCAGGAGCCGCAGCACAGAAAGAGCCATCATGACAGAACAAGACGTAGAAAATGAGCTGTTGGATTACGAAGAAGACGACGAGCCTCAGGCACCCGCTGAAACTGCAGCTCCAATCGCCCGGAAAGAGGTGAAAGGCTCCTACGTGTCCATCCACAGCTCCGGCTTCCGAGACTTCTTGCTGAAACCCGAACTCCTCCGATCCATCGTAGACTGCGGTTTTGAACATCCCTCTGAGGTCCAACATGAGTGTATCCCTCAGGCTATCCTGGGCATGGACATCCTTTGCCAAGCAAAATCTGGTATGGGGAAGACTGCTGTCTTTGTCCTGGCCACCCTGCAGCAAACCGAAGCCGTGGAAGGGCAGGTGACTGTCCTAGTTATGTGCCACACGCGTGAGCTAGCGTTCCAGATCAGCAAGGAGTATGAGCGGTTCTCCAAATACATGCCGACTGTCAAAGTGGCAGTTTTCTTTGGCGGGCTCTCTATTAAGAAAGATGAAGACACCATACGCAAGAGCTGTCCCCATATTGTTGTCGGAACACCGGGTCGCATCCTGGCGCTCGTCAGAAGCAAGATCCTGAATCTGAAGAACGTGAAACACTTTGTGTTGGACGAGTGTGACAAGATGCTGGAGCAGTTAGATATGAGAAGAGATGTACAGGAGATTTTCCGCCTAACACCCCATGAGAAACAGTGCATGATGTTCAGTGCCACCCTGAGTAAAGAGATCCGCCCTGTGTGCCGGAAGTTCATGCAAGATCCTATGGAGGTATTTGTGGATGATGAGACCAAGCTGACCCTTCATGGCCTGCAGCAATATTATGTCAAGTTAAAAGACAGTGAGAAGAACCGCAAGCTTTTTGATCTACTGGACGTATTAGAGTTTAATCAGGTGGTGATCTTTGTGAAATCAGTGCAGAGATGCATGGCTCTGGCCCAGCTCTTGACTGAACAAAACTTCCCTGCTATCGCTATTCACAGAAACATGTCGCAGGAGGAGAGGCTCTCCAGATACCAGCAATTTAAAGACTTTCAGAGAAGAATCCTGGTGGCCACAAATCTGTTTGGTCGAGGAATGGACATCGAGCGAGTGAATATTGTGTTTAATTACGACATGCCAGAAGACTCTGACACATACCTGCACAGGGTAGCCCGTGCCGGCAGATTTGGTACAAAGGGCTTGGCCATAACCTTTGTGTCGGATGAGGAAGATGCCAAAATCCTTAATGACGTTCAGGACAGGTTTGAAGTCAACGTGGGGGAGCTGCCTGATGAAATAGACATATCTACTTACATTGAGCAGACCCGATAACCACCTCGTCCGTGTTGCCCCCTCTCCCAAGGTGACTGTGGCGCCCGCCTCCATTCTGCTCCCTTCGTCTGCCCACGCACCCGTGCAGGGAATGGCGGCTTCGGTTTTACTGTTTGGGTTTTTTTATGAAATGTTTGTTGTTTTTGTTTAAAGAAGGGTAAAAAGATTAAACTTTTTTATTATTAAAAAAAAAAAAAAAAAA	Refseq >NM_001086154\|Xenopus laevis DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (ddx39a), mRNA CTTTTTTTCATCACGGCCAGCGAATCAACTACTGGAAGTGGCGGCAGCTGGTGTTGCGGCTGGCCAATCAGCGACGGCGGGAGGAGTCTTGCTTTACTAGGCCTTGTCTTTTTGGGTTGGTGGTTTTGGTCGGGTCGCGCACACGTGGAGCAGGAGTACAGAAAGAGACATCATGACAGAACAGGACGTTGAGAATGAGCTGTTGGACTATGAAGAAGATGACGAACCTCAGGCACCCGCTGAAACTGCAGTTCCCATCGCTCGAAAAGAGGTGAAAGGCTCCTATGTGTCCATCCACAGCTCCGGCTTCAGGGACTTCTTGCTGAAACCCGAACTTCTCCGATCCATTGTAGACTGTGGCTTTGAACATCCCTCTGAAGTCCAACACGAGTGTATTCCTCAGGCCATCCTCGGTATGGACATTCTTTGCCAGGCTAAATCTGGTATGGGAAAGACTGCTGTGTTTGTCCTTGCCACCCTGCAGCAGATTGAAGCAGTGGAGGGGCAGGTGTCTGTCCTAGTTATGTGCCACACTCGTGAGCTGGCCTTCCAGATCAGTAAGGAATACGAGAGATTCTCCAAATATATGCCAACTGTCAAAGTGGCAGTCTTCTTTGGTGGGCTCTCTATCAAGAAAGACGAAGACACCATACGCAAGAGCTGTCCCCATATCGTTGTTGGAACGCCAGGTCGTATCTTGGCACTGGTCCGAAGCAAGATCCTGAATTTGAAGAATGTGAAACACTTTGTGTTGGATGAATGTGACAAGATGCTGGAGCAGCTGGATATGAGAAGAGATGTACAGGAGATTTTCCGTCTGACACCCCATGAGAAACAGTGCATGATGTTCAGCGCCACCCTGAGTAAAGAGATCCGTCCTGTGTGTCGGAAGTTCATGCAAGATCCTATGGAGGTATTTGTGGATGATGAGACAAAGCTAACACTTCATGGTCTGCAGCAATATTATGTAAAGTTAAAGGACAGTGAGAAGAACCGCAAGCTTTTTGATTTACTGGATGTATTAGAGTTTAATCAGGTGGTTATCTTTGTGAAATCAGTGCAGAGATGCATGGCTCTTGCTCAGCTCTTGATTGAACAAAACTTCCCTGCTATTGCTATTCACAGAAACATGTCGCAGGAGGAGAGGCTCTCCAGATACCAGCAATTTAAAGACTTTCAAAGAAGGATCCTGGTGGCCACAAATCTGTTTGGTCGAGGAATGGACATTGAGCGAGTGAATATTGTTTTCAATTACGACATGCCAGAAGACTCTGACACATACTTGCATAGGGTAGCCCGTGCAGGTAGATTTGGCACAAAGGGTTTGGCCATAACCTTTGTGTCAGATGAAGAAGATGCCAAAATCCTTAACGACGTTCAAGATAGGTTTGAAGTCAATGTGGGGGAGCTGCCTGATGAAATAGACATATCTACCTACATCGAGCAGAGCCGATAACCACCTCCTCCACGCTGTGTCTCCCCTCTCCCAAGTTGACTGGCGCTCGCCTCCATTCTGCTCCCTTCGTCTGCCCATGCAGGGAATGAAGTGTTTTCGGTTTTACCGTTTGGGTTTTTTATGAAATGTGTGTTTTTGTTTTTGTGTAAAGGGTAAAAAAATTAAACTTTTTATTATTAAAACTCTGTTCTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein	Refseq >NP_001016000\|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus (Silurana) tropicalis] MTEQDVENELLDYEEDDEPQAPAETAAPIARKEVKGSYVSIHSSGFRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQTEAVEGQVTVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCPHIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQDRFEVNVGELPDEIDISTYIEQTR	Refseq >NP_001079623\|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus laevis] MTEQDVENELLDYEEDDEPQAPAETAVPIARKEVKGSYVSIHSSGFRDFLLKPELLRSIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEAVEGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDTIRKSCPHIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEEDAKILNDVQDRFEVNVGELPDEIDISTYIEQSR

Genomic	tropicalis
Genome Browser	Xenbase	Xenbase JGI Ensembl UCSC	Xenbase

Synteny	Metazome

Expression	tropicalis	laevis
UniGene	Str.8802 [+] Str.9765 Str.11653 Str.41768 Str.45646 Str.53527 Str.54673 Str.54694 Str.62817 Str.72554 Str.72568 Str.75180	Xl.4554
Unigene EST Profile	EST Profile	EST Profile
GEO data		GEO
Images	6 expression image(s) for tropicalis and laevis

Orthology	MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		DDX39A
mouse	MGI	Ddx39	All(2) Targeted, other(2)
zebrafish	ZFIN	ddx39aa

Publications
First:		Human cystinuria-related transporter: localization and functional characterization. [Kidney Int 2001]
Most recent:		A large scale screen for neural stem cell markers in Xenopus retina. [Dev Neurobiol 2012]
		View All Papers

Functional Ontologies
GO: Molecular:		ATP binding ATP-dependent DNA helicase activity ATP-dependent RNA helicase activity More[+] ATP-dependent helicase activity ATPase activity ATPase activity, coupled ATPase activity, coupled to transmembrane movement of ions ATPase activity, coupled to transmembrane movement of substances ATPase activity, uncoupled DNA translocase activity DNA-dependent ATPase activity RNA-dependent ATPase activity helicase activity nucleic acid binding protein-transmembrane transporting ATPase activity single-stranded DNA-dependent ATP-dependent DNA helicase activity
Biological:
Cellular Component:
EC:		adenosinetriphosphatase
KOG:		[A] ATP-dependent RNhelicase (alt_id KOG:0329)

Reagents	tropicalis	laevis
Clones	open biosystems	open biosystems
	geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0	Str.8802.1.S1_at [+] Str.36345.1.A1_at Str.36345.1.A1_x_at Str.45646.1.A1_at Str.45953.1.A1_at Str.47238.1.A1_at Str.11653.1.A1_at	Xl.4554.1.S1_at
Affymetrix 2.0		Xl2.4554.2.S1_a_at

Symbol legend[+]