rpl3 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (1)

Nucleotides (4165)

Interactants (0)

XB-GENEPAGE-971702

[provisional- machine annotated only] Gene Symbol: rpl3 [Predicted: Source is Human Entrez Gene] Gene Name: ribosomal protein L3 [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: 60S ribosomal protein L3 and related proteins Interactants:

XB-GENE-971703

XB-GENE-971707

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001126603\|Xenopus (Silurana) tropicalis ribosomal protein L3 (rpl3), mRNA GTTCGGTCAGGGCTTGAGATGTCTCACCGAAAGTTTTCAGCCCCCCGACATGGTTCCCTGGGCTTCTTGCCCCGCAAGCGTTCCAAGAGACATCGTGGCAAAGTGAAGAGCTTCCCTAAGGATGACCAGAGCAAGCCCATTCACCTGACTGCCTTCCTGGGCTACAAGGCTGGCATGACCCACATTGTCCGGGAGGTGGACAGGCCTGGTTCTAAGGTGAATAAGAAAGAAGTTGTGGAAGCAGTTACTGTGGTTGAAACACCTCCCATGGTAATAGTTGGTATTGTTGGCTACGTCCAGACTCCCCGTGGTCTGCGCAGTTTGAAGACCATCTTTGCTGAGCACATCAGTGATGAATGCAAGAGGCGCTTTTACAAGAACTGGTACAAATCCAAGAAGAAGGCATTCACAAAGTACTGCAAGAAATGGCAGGATGACGAGGGCAAGAAGCAGCTGGAGAAGGACTTTGCCAGCATGAAAAAGTACTGCCAAGTCATCAGGGTTATTGCCCATACACAGATGCGCCTGCTTCCCCTGCGCCAGAAGAAATCTCACCTCATGGAAATTCAAGTGAACGGAGGTACAGTAGCTGAGAAGGTCGACTGGGCCCGTGAGAAATTGGAGCAGCAGGTTGCAATCACAGGAGTGTTCGGGCAGGATGAAATGATTGATGTGATTGGTGTCACTAAAGGAAAGGGCTACAAAGGTGTAACTAGCCGCTGGCACACAAAGAAGCTGCCCCGTAAGACTCATAGAGGTCTTCGTAAGGTGGCTTGTATTGGAGCTTGGCATCCTGCCCGTGTGGCCTTCTCAGTAGCCCGTGCTGGACAGAAGGGATACCACCACCGCACAGAGATCAATAAGAAGATTTACAAAATTGGCCAGGGCTACCATTCAAAGGATGGTAAACTTGTCAAGAACAACGCTTCAACAGACTACGATCTGTCAGACAAGAGCATCAACCCTCTGGGTGGGTTTGTTCACTATGGTGAGGTGAAAAACGACTTTGTCATGTTGAAAGGCTGTGTTATTGGGACCAAGAAGAGAGTGCTCACACTGCGCAAGTCCCTCCTTGTGCAAACCAGTCGCCGTGCCCTGGAGAAGATTGATCTTAAATTTATTGATACAACCTCCAAGTTTGGGCATGGTCGTTTCCAGACAGCAGAGGAAAAGAAGGCTTTCATGGGACCACTCAAGAAGGACCGCTTGGCAAAAGAGGAAACTGCATGAATATGAACTTTGTTCCTGTTTGTCTGAGATACTACAGTTTTATCTGTGAGCTCTTAATAAAAATAACATCTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001086872\|Xenopus laevis ribosomal protein L3 (rpl3), mRNA GGCTTGAAATGTCTCACCGAAAGTTCTCAGCCCCCCGACATGGATCCCTGGGCTTCTTGCCCCGCAAACGTTGTAAGAGACATCGTGGCAAAGTGAAGAGCTTCCCCAAGGATGACCCAAGCAAACCCATTCACCTGACCGCTTTCTTGGGCTACAAGGCTGGCATGACTCACATTGTTCGTGAGGTCGACCGACCTGGCTCAAAGGTGAACAAGAAAGAGGTTGTGGAAGCAGTAACTGTGGTTGAAACACCTCCCATGGTAATTGTTGGTATTGTTGGCTATGTCCAGACTCCTCGTGGTCTGCGCAGCTTGAAGACCATCTTTGCTGAGCACATCAGTGATGAATGCAAGAGGCGCTTCTACAAGAACTGGTACAAATCCAAGAAGAAGGCGTTCACAAAGTACTGCAAGAAATGGCAGGATGAAGACGGAAAGAAACAGCTGGAGAAGGACTTTGCTAGCATGAAAAAGTACTGCCAAGTCATCAGGGTTATTGCCCATACACAGATGCGTCTGCTTCCCCTGCGCCAGAAGAAGTCTCACCTCATGGAGATTCAAGTGAACGGAGGTACAATTGCAGAGAAGGTGGACTGGGCCCGTGAGAAACTGGAGCAACAAGTTGTAATTGGAGGAGTGTTCGGGCAGGATGAAATGATTGATGTGATTGGTGTCACTAAAGGAAAAGGCTACAAAGGTGTAACTAGCCGTTGGCACACAAAGAAACTGCCCCGTAAGACTCACAGAGGTCTTCGTAAAGTGGCTTGTATTGGAGCTTGGCATCCTGCCCGTGTGGCTTTCTCAGTAGCCCGTGCTGGACAGAAGGGATACCACCACCGTACAGAGATTAACAAAAAGATTTACAAAATTGGCCAGGGCTACCATTCAAAGGATGGTAAACTTGTGAAGAACAATGCTTCAACAGACTACGATCTATCTGACAAGAGCATCAACCCTCTGGGTGGGTTTGTTCATTATGGAGAGGTGAAAAATGACTTTATCATGCTGAAAGGCTGTGTTATTGGGACCAAGAAGAGAGTACTCACACTGCGCAAGTCCCTCCTTGTGCAAACCAGTCGCCGTGCCCTGGAGAAGATTGATCTCAAGTTTATTGATACAACATCCAAGTTTGGGCATGGTCGTTTCCAGACAGTAGAGGAAAAGAAGGCTTTCATGGGACCACTCAAGAAAGACCGTTTGGCAAAAGAGGAAACTGCATGAATATGAACTTTATTCCTGTTTGTCTGAGATTGCAGTTTTATTTGTGAGCTCTTAATAAAAGTAACATCTAAATAAAAAAAAAAAAAAA
Protein		Refseq >NP_001120075\|ribosomal protein L3 [Xenopus (Silurana) tropicalis] MSHRKFSAPRHGSLGFLPRKRSKRHRGKVKSFPKDDQSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTVVETPPMVIVGIVGYVQTPRGLRSLKTIFAEHISDECKRRFYKNWYKSKKKAFTKYCKKWQDDEGKKQLEKDFASMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKLEQQVAITGVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGEVKNDFVMLKGCVIGTKKRVLTLRKSLLVQTSRRALEKIDLKFIDTTSKFGHGRFQTAEEKKAFMGPLKKDRLAKEETA	Refseq >NP_001080341\|ribosomal protein L3 [Xenopus laevis] MSHRKFSAPRHGSLGFLPRKRCKRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTVVETPPMVIVGIVGYVQTPRGLRSLKTIFAEHISDECKRRFYKNWYKSKKKAFTKYCKKWQDEDGKKQLEKDFASMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGTIAEKVDWAREKLEQQVVIGGVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYHSKDGKLVKNNASTDYDLSDKSINPLGGFVHYGEVKNDFIMLKGCVIGTKKRVLTLRKSLLVQTSRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRLAKEETA

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.643 [+] Str.49778 Str.75829	[+] Xl.8842 Xl.85606
Unigene EST Profile		EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	RPL3
mouse		MGI	Rpl3
zebrafish		ZFIN	rpl3	5 Lines(s)

Publications
First:		Ribosomal protein L3 mediated the transport of digoxin in Xenopus laevis oocyte. [J Toxicol Sci 2010]
Most recent:
		View All Papers

Functional Ontologies
GO: Molecular:		structural constituent of ribosome
Biological:		translation
Cellular Component:		intracellular ribosome
EC:
KOG:		[J] 60S ribosomal protein L3 and related proteins

Reagents		tropicalis	laevis
Clones		open biosystems
		geneservice/RZPD imagenes
Affymetrix 1.0		Str.49778.1.S1_at [+] Str.1340.2.S1_at Str.41566.1.A1_x_at Str.46978.1.A1_at Str.47062.1.A1_x_at Str.5623.1.A1_at
Affymetrix 2.0			Xl2.8842.3.S1_x_at [+] Xl2.8842.3.S1_a_at Xl2.8842.3.S1_at Xl2.8842.2.S1_x_at Xl2.8842.2.S1_a_at

Symbol legend[+]