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Summary Expression Gene Literature (7) GO Terms (8) Nucleotides (1203) Proteins (28) Interactants (55) Wiki
XB-GENEPAGE- 973552

Gene Symbol: alyref

Gene Name: Aly/REF export factor

Synonyms: ALY , thoc4
Add Xenopus synonyms , Nomenclature history


Gene Function: RRM motif-containing protein

Protein Function:
Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX ...[+]


Interactants: Loading ...

OMIM Disease Associations:
1/6
 
Xenbase Gene ID XB-GENE-973553 XB-GENE-973560 XB-GENE-17340719
Gene Symbol alyref alyref.L alyref.S
Chromosome Chr10 chr9_10L Scaffold27
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 8.0 JBrowse 8.0 GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0 GBrowse 9.1 JBrowse 9.1
Entrez Gene
Entrez Gene
mRNA Refseq Refseq
Protein Refseq Swiss-Prot Refseq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.48929 [+] Xl.25866
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Experimental regulation Regulation heatmap:
Images 25 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine alyref alyref.L alyref.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards ALYREF OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Alyref MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN alyref ZFIN Ensembl
chicken
GEISHA ALYREF Ensembl
fruit fly
worm
WORMBASE
Publications
First: The Y14 protein communicates to the cytoplasm the position of exon-exon junctions. [EMBO J 2001]
Most recent: HIV-1 Rev protein specifies the viral RNA export pathway by suppressing TAP/NXF1 recruitment. [Nucleic Acids Res 2014]
View All Papers
Functional Ontologies tropicalis laevis.L laevis.S
GO 7 terms 8 terms 0 term
EC
PANTHER alyref
KEGG Pathways K12881 K12881
KOG [A] RRM motif-containing protein
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones   EXRC - 1 clone(s)  
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience
ORF alyref ORF1
Affymetrix 1.0 Str.1662.1.S1_s_at [+] Xl.3859.1.A1_at
Affymetrix 2.0 Xl2.25866.1.S1_at

Symbol legend[+]

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