calm1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Nucleotides (982)

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XB-GENEPAGE-976641

[provisional- machine annotated only] Gene Symbol: calm1 [Predicted: Source is Human Entrez Gene] Gene Name: calmodulin 1 (phosphorylase kinase, delta) [Predicted: Source is Human Entrez Gene] Synonyms: cami, dd132, calml2 Add Xenopus synonyms Gene Function: Calmodulin and related proteins (EF-Hand superfamily) Interactants:

XB-GENE-976642

XB-GENE-976648

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		NCBI Nucleotide >XM_002932378\|PREDICTED: Xenopus (Silurana) tropicalis calmodulin-like, transcript variant 1 (LOC100496298), mRNA AAATTAGTCCGAGCCGAGCCTGCGAGGGTTTAGGTTGCGTCGGAGACATTGTGCGCGTCTGGTCAGAGCTTCTCGATTATACTAACGCAACTATTCCGAAATGGCTGACCAACTGACAGAAGAGCAGATTGCAGAGTTCAAAGAAGCATTCTCATTATTCGACAAGGATGGGGATGGTACCATCACCACAAAGGAACTTGGCACTGTTATGAGGTCGCTTGGACAAAATCCAACAGAAGCAGAATTGCAGGATATGATCAATGAAGTAGATGCTGATGGCAATGGAACAATTGACTTTCCTGAATTTCTGACTATGATGGCTAGAAAAATGAAGGACACAGACAGTGAAGAAGAAATCAGAGAAGCATTCCGCGTGTTTGACAAGGATGGGAATGGTTATATCAGTGCTGCTGAATTACGTCACGTGATGACAAACCTTGGGGAGAAATTAACAGATGAAGAAGTTGATGAAATGATAAGGGAAGCAGATATTGATGGAGATGGCCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGAGTGTACAGAATGTGTTTAAATCTCTTGTACAAAGATGTTTATCTGCCTTTCTTTGTTTGTAACTTATCTGTAAAATGTTCCCTTACTGTCAAAAAAATGCATGTATAGTAATTTAGAATTCCATCCATGTTTCCCATCTTGTCATAATTTTTTTTTTTTTTTTTTTGTTTATTTTGTTTTTTAAATCCAAGTATCTAGTCTGCTTGTTGGAATGTGGAGTAAACAACTCTAAAACTACAGATCATTAACAATATTGAACTTATGTTGCACTAATGCAAAACTGGTAAATCCAGGTACTTGTCTCGTACACACTTTTTTTTTCCCCTCCCCTTCCCAGCTCCCCCCATACTTTTCCTGACCTGTGTACGGAACATTCACATTGCTTTTTTTCTTTTTTTTTTTTCTTGTTCAACTGCATTCACTGGTGAGAGCTCTGCAGAACAACATTGTTCAGCACAGAGTTCCTCTGCTGGTATAAAAAAAAAAGTTTACTTTTTGTTTTCATTTCTTTTTGTTTAGCCACTTCCTTCCTTTAAACCTGCTTATGGCACAATTTGCCTCAAATCCATTCCAAGTTGTATATTTGTTTTCCAATAAAAAAGACAATTTACTATGGCTTCCTCTGTTTTAATTTGGGCAGTTTTTTTTTTTTTTTTTTTCGCCCCTTCCCTAAAAACTTGAACCAAGAATAATAAAATGGCTACTACTCTGTT	Refseq >NM_001095590\|Xenopus laevis calmodulin 1 (phosphorylase kinase, delta) (calm1), mRNA AGCTGCGTGAGCTGGGCACATTGACTTAAGCGGCTTTGTGGAGACACCGGGAGTAACTCTCTGTATATCCCTCACGAGCATATCGAGACCACTATGGCCGATCAACTGACAGAAGAACAGATTGCTGAATTTAAGGAGGCTTTCTCCTTGTTTGACAAAGATGGTGACGGTACCATCACAACTAAAGAACTTGGGACAGTTATGAGATCTCTTGGTCAGAACCCAACCGAGGCTGAGCTTCAAGATATGATCAATGAAGTAGATGCTGATGGCAATGGAACAATTGACTTTCCAGAATTCCTTACCATGATGGCAAGAAAAATGAAAGATACAGACAGCGAGGAGGAAATTCGTGAGGCATTCAGAGTTTTTGACAAGGACGGCAATGGTTACATTAGTGCAGCAGAGCTCCGCCATGTAATGACTAATCTAGGAGAAAAATTAACAGATGAAGAAGTAGATGAAATGATCAGGGAAGCAGATATAGATGGTGATGGCCAAGTCAACTACGAAGAATTCGTACAGATGATGACTGCAAAATGAGGCCTCTTCACCTTTTCCCCCTCTAGAAGAATCAAATTGAATCTTTTACTTACCTCTTGCAAAAATGTTCATTTACTCATTCTGTTTCTGTATAGCAAAACTGAATGTCAAGAAAAAACCTTGTCCACAAAAAAAAATCTGCATGTAATGGTTGGTGGTCCTGTTTCCAAAAAGATCAGTCTAAACATCAGTTGTACAGTATATAAATACTTGTACTATCTTACAACAAGGAAGCACTTGGCGGACTCCTTACGTTCCGTTTGCTAATGATTACTCCACTGTTTGGGCTGGCCAGTTTTACATGCATGCAGCTTGACAATTGAGCACAGTCAGACCTTTGTATTTAAAACCTAAAAAGAAAAAAAAAAAAAAAAA
Protein		NCBI Protein >XP_002932424\|PREDICTED: calmodulin-like isoform 1 [Xenopus (Silurana) tropicalis] MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK	Refseq >NP_001089059\|calmodulin 1 (phosphorylase kinase, delta) [Xenopus laevis] MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.76621	[+] Xl.543
Unigene EST Profile		EST Profile
GEO data			GEO
Images		11 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	CALM1
mouse		MGI	Calm1	All(2) Targeted, other(2)
zebrafish		ZFIN ZFIN	calm1a calm1b

Publications
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Functional Ontologies
GO: Molecular:		calcium ion binding
Biological:
Cellular Component:
EC:
KOG:		[T] Calmodulin and related proteins (EF-Hand superfamily)

Reagents		tropicalis	laevis
Clones		open biosystems
		geneservice/RZPD imagenes
Affymetrix 1.0		Str.10372.3.A1_at [+] Str.10372.4.S1_a_at Str.10372.1.S1_at Str.10372.1.S3_at Str.10372.1.S2_at	Xl.24457.1.S1_at
Affymetrix 2.0			Xl2.543.1.S1_at [+] Xl2.543.1.S2_at

Symbol legend[+]