ubxn1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (0)

Nucleotides (254)

Interactants (0)

XB-GENEPAGE-979856

[provisional- machine annotated only] Gene Symbol: ubxn1 [Predicted: Source is Human Entrez Gene] Gene Name: UBX domain protein 1 [Predicted: Source is Human Entrez Gene] Synonyms: 2b28, saks1, ubxd10 Add Xenopus synonyms Gene Function: Predicted ubiquitin regulatory protein Interactants:

XB-GENE-979857

XB-GENE-6251745

XB-GENE-979863

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001004957\|Xenopus (Silurana) tropicalis UBX domain protein 1 (ubxn1), mRNA GAAAGATCAGGAGCTACGGGAGCAGTTCGGGCAATGTGGGGAATGTAAACAATACACTGGGACAGCCAGCTGCCTTATGTTAATCGGGCTGTCCCGTGAAAAGCTGCCAACTTGGGAGGTATGTTTCTAGTGCAGTATGGCAATGTATGATATTCGGCCACTGTGCAGGTTGGGAACAGACACAGAGGGGCGGGGCTGGGGAGGAGTTTCCTCCGCTACTGCAAAGTTCTGTCTGTCAGTACTATGACTACTTCCTGTGAAAGAATGAAGCGACCCCCTCCCCCCCATTCCTCATTTCAGCAAACACACTGAAGAGAAAGGATGTCTATGTAGCTCTGATCTAATTACATTTTTAGGAGAGATGGCTGAGTGTTCCACGCTGGAGAGTCTCATTGAGATGGGATTTTCACCCAGTAGAGCAGAGAAGGCATTGGCTGCTACTGGCAATCAGGGAATAGAACCAGCTATGGACTGGTTAGTAGAACATGAAGATGATCCTGATATTGATGAACCAAGTGTGGTTGTCCCTGAAGATAGTGATTCTGGTACAACAGATACACAAGGCATGGACACCTGTGAAGAAAGACTTCCCCTGACTGAAGAGGAGAAAGAGAAACAGACAAAGAGGATGATGGAACTGATTGCCCAGAAGCAGAAAGAGCGAGAAGAAAGAGAGAAGAGGGAAAGGATTGAACAGGAAAAGCAGCGACGGAAGCAAGGTCAAGAATTGTCTGCAGTCAAGCAGAAAATACAAGAACAAGAGATGCAGAAAGCTGTTGAAGACAGAAGAAGAGAAAAACAAGAAGAGAAGCTGGCAAGGGATAGAGTCCGGGAAAAAATTGCACGAGATAAAGCTGAGAGAGCTAGAAGGTTTGGAGGAGCAGGTTCAGAACCGATCTCGCCTCCAGCAGAGGCCTCTATTCCTGCTACCACCCCATCCCCATCTTCCCCAGTACAAGAGCCGCCCACTAAGAAGGAATATGATCAGTGCCGTATTCAGGTGCGTCTGCTTGATGGATCTGCCTTATCCCAGACTTTCCGTGCTCGAGAGCAGCTAGCGGCGGTGCGTCTGTATGTGGAGCTGAACTGGCCTGGGGGTGCCCCGGGGCCTTTCAATCTCCTCACAAGCTTCCCAAGAAGAGTCTTCACAGAAGAGGACATGGAAAAGCCCTTGCAAGAACTTGGTTTGGTGCCTAGTGCAGTCCTAATTGTTGCCAGAAAATAAAACCGCACATGAATTGTAACCACCTGAAAACGTGAAATGCAGTGTGTGCTCCCCAGAAGAGCACAGACTGTAGGAGAGGCCTCTCTCCCTGGAAAGACAACACACGGACTGTTCTTCACGCATCTCCCTGAGGTGTACTGTAGTGTGTGCGTGTGTTCAGAGGGAGAAATAAACCAGTGTGATATGAACATCCACTCTTCTGGATACACGGTTATTCTGATGTAAAATGATCTGCTCTGCTAAAAGTTGAGTCCCTTCTATTAAATAATATCAACTTTTACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001091919\|Xenopus laevis UBX domain protein 1 (ubxn1-a), mRNA GAAGAAAAAAAGATCTCCCTGCAGAGATGGCCGAGTGTTCTACACTGGAGAGTCTAATTGAAATGGGATTTTCATCCACTAGAGCGGAGAAGGCGTTGACTGCTACTGGCAATCAGGGAATAGAACCAGCTATGGACTGGTTAGTAGAACATGAAGATGATCCTGATATTGATGAGCCAAGTGTGGTTGTTCCTGAAGGCAGTAGTACTGATACAGCTGATACAGCTGATACAACTGATACAACTGATACAACTGATACACAAGGCATGGACACCAGTGCAGAAAGGCTTCCCTTGACCGAAGAGGAGAAAGAGAAACAGACAAAGAGGATGATGGAACTCGTTGCCCAAAAGCAGAATGAGCGAGAAGAACGAGAGAAGAAGGAAAGGATTGAACAGGAAAAGCAGCGGCGAAAGCATGGTCAAGAACTGTCCGCAATCAAGCAGAAAATGCAAGAACAAGAGATGCAAAAAGCAGCTGAAGACAGAAGAAGAGAAAAACAAGAAGAGAAGATGGCAAGGGAAAGAGTCCGGGAAAAAATTGCACGAGATAAAGCTGATAGAGCAAGAAGGTTTGGGGGAGCAAGTTCAGAGCCAATCTCACCTCCAGCAGAGACCTCTATTCCAGCTACCACTCCCTCCCCATCTTCTCCAGTACAAGAGCCCCCCACTAAGAAGGAATATGATCAGTGCCGTATCCAGGTGCGCCTGCTTGATGGATCAGCCTTATCTCAGACGTTCCGTGCTCGAGAGCAACTTGCTGCTGTGCGTCTGTATGTGGAGCTGAACTGGCCTGGGGGACCTCCAGGGCCATTCAGTCTCCTCACAAGCTTCCCACAAAGAGTTTTCACAGAGGAGGACATGGAAAAGCCCTTGCAAGAACTGGGTTTGGTGCCTACTGCAGTCCTGATTGTTGCCAAAAAATAAAACTGCACATGAATCACTTGAACAGATCGAATGCAGTGTCTGCTCCCCAGAAGCCAAGAACAGCGCAGACTGCAGGACTGACCTATCTCTCCCTGGGAAGACAACACACTGACTGATCTTCACTCTCCTCCCTGAGTTCTACTGTAGTGTGTGTATGTATTCAGAGGGAGAAATAAAACCAGTGTGATATAAACATCCATTCTTCATGATACAAAGTTATTCTGATGTAAAATGATCTGCTCTGCTAAAAGTTGAGTACCTTCTATTAAATAATCAACTTTTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA		Refseq >NM_001092755\|Xenopus laevis UBX domain protein 1 (ubxn1-b), mRNA CACGCTGGAAAGAACAGAATGCAGGAAAGAACTGGAGCGAGCAGGGCAATGCAGGAAATGCAGATATGTGCAGGCTGAGAACATACACACAGGGAGGAACTTGGGAGGAGTTTTCCCTGCTGCTGCTGCAGACTTCTGCCTGTCAGTCAGTGCTATGACCACTTCCTGAGAAAGAACGAAGAGATACTCCCATTCCTCATTTCAGCAAAAAACGCTGAAGAGAAAAAATCCCTCTGCAGTTCTCATGTTATGACATTTTTAGGAGAGATGGCTGACTGTTCTGCGCTGGAGAGTCTAATTGAAATGGGATTTTCACCCAGTAGAGCGGAGAAGGCACTGTCTGCCACTGGCAATCAGGGAATAGAGCCAGCCATGGACTGGTTAGTAGAACATGAAGATGATCCTGATATTAAAGAACCAAGTGTGGTTATTCCCGAAGACAGTGGTACTGACACAACGGATACAACTGATACACAAGCCATGGACACCAGCGCAGAAAGACTTCCCCTGACAGAAGAGGAGAAAGAGAAACAGACAAAAAGAATGATGGAACTCATTGCCCAGAAGCAAAAAGAGCGAGAAGAACGAGAGAAGAGGGAAAGGATTGAACAGGAAAAGCAGAGACGAAAGCATGGTCAAGAACTGTCAGCAATCAAGCAGAGAATGCAAGAACAAGAGATGCAAAAAGCAGCTGAAGATAGAAGAAGAGAAAAACAAGAAGAGAGGTTGGCAAGGGAAAGAGTCCGGGAAAAAATTGCACGAGATAAAGCTGACAGAGCAAGAAAGTTTGGGGGAGCAGGTTCAGAACCAATCTCACCTCCAGCAGAGACCTCTGTTCCAGCTACTGCTCCATCCCCATCTTCCCCAGTACAAGAGCCGCCCACTAAGAAAGAATATGATCAGTGCCGTATTCAGGTGCGCCTGCTTGATGGATCTGCCTTATCTCAGACTTTCCGTGCCCGGGAGCAGCTAGCTGCTGTACGTCTGTATGTGGAGCTGAACTGGCCTGGGGGACCTCCGGAGCCATTCAGTCTCCTCACAAGCTTCCCACGAAGAGTCTTCACAGAAGAGGACATGGAAAAGCCCTTACAAGAACTGGGTTTGGTGCCTACTGCGGTCCTGATTGTTGCTAAAAAATAAAACTGCATGTTATTCTTAACCACCCGAACACATCAAATGCAGAGTCTGCTCCCCAGAACAGCACAGACTACAGGAGAGACCTACCGTATCTATTCCTGGGAAGACAACACACAGACTGTTCTTCACTCACCTCCCTGAGGTGCACTGTAGTGTGTGTGTATTTAGAGGGAGAAATAAACCAGTGTGATATAAACATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001004957\|UBX domain-containing protein 1 [Xenopus (Silurana) tropicalis] MAECSTLESLIEMGFSPSRAEKALAATGNQGIEPAMDWLVEHEDDPDIDEPSVVVPEDSDSGTTDTQGMDTCEERLPLTEEEKEKQTKRMMELIAQKQKEREEREKRERIEQEKQRRKQGQELSAVKQKIQEQEMQKAVEDRRREKQEEKLARDRVREKIARDKAERARRFGGAGSEPISPPAEASIPATTPSPSSPVQEPPTKKEYDQCRIQVRLLDGSALSQTFRAREQLAAVRLYVELNWPGGAPGPFNLLTSFPRRVFTEEDMEKPLQELGLVPSAVLIVARK UniProtKB	Refseq >NP_001085388\|UBX domain-containing protein 1-A [Xenopus laevis] MAECSTLESLIEMGFSSTRAEKALTATGNQGIEPAMDWLVEHEDDPDIDEPSVVVPEGSSTDTADTADTTDTTDTTDTQGMDTSAERLPLTEEEKEKQTKRMMELVAQKQNEREEREKKERIEQEKQRRKHGQELSAIKQKMQEQEMQKAAEDRRREKQEEKMARERVREKIARDKADRARRFGGASSEPISPPAETSIPATTPSPSSPVQEPPTKKEYDQCRIQVRLLDGSALSQTFRAREQLAAVRLYVELNWPGGPPGPFSLLTSFPQRVFTEEDMEKPLQELGLVPTAVLIVAKK UniProtKB		Refseq >NP_001086224\|UBX domain-containing protein 1-B [Xenopus laevis] MADCSALESLIEMGFSPSRAEKALSATGNQGIEPAMDWLVEHEDDPDIKEPSVVIPEDSGTDTTDTTDTQAMDTSAERLPLTEEEKEKQTKRMMELIAQKQKEREEREKRERIEQEKQRRKHGQELSAIKQRMQEQEMQKAAEDRRREKQEERLARERVREKIARDKADRARKFGGAGSEPISPPAETSVPATAPSPSSPVQEPPTKKEYDQCRIQVRLLDGSALSQTFRAREQLAAVRLYVELNWPGGPPEPFSLLTSFPRRVFTEEDMEKPLQELGLVPTAVLIVAKK UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.4804 [+] Str.42079 Str.50352	Xl.1496		Xl.80430
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human			UBXN1
mouse		MGI	Ubxn1
zebrafish		ZFIN	ubxn1

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:		[O] Predicted ubiquitin regulatory protein

Reagents		tropicalis	laevis a		laevis b
Clones		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.4804.1.S1_a_at [+] Str.42079.1.A1_x_at Str.42079.2.A1_x_at
Affymetrix 2.0			Xl2.1496.1.S1_at [+] Xl2.1496.1.S1_s_at Xl2.1496.1.S1_x_at		Xl2.47309.1.S1_at

Symbol legend[+]