usp30 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Nucleotides (117)

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XB-GENEPAGE-981068

[provisional- machine annotated only] Gene Symbol: usp30 [Predicted: Source is Human Entrez Gene] Gene Name: ubiquitin specific peptidase 30 [Predicted: Source is Human Entrez Gene] Add Xenopus synonyms Gene Function: Ubiquitin-specific protease Interactants:

XB-GENE-981069

XB-GENE-6255231

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001045620\|Xenopus (Silurana) tropicalis ubiquitin specific peptidase 30 (usp30), mRNA TCAGACGCAGCTGCCTTACAGCATTTGCAGGAGTTGTGACATGTCCTGGGCTCCAGTGAGTACTTGGAGCAGGCGGACACCTTTGGCAGCTTGCTGTAGTGCCCCAGAGCTCCCTCCTGCTGGAGCCTGGAAAGCTTGTGCTGCTGGTTCTCTTCGAATTGGACCGCAAGGGAGGTGTAAAATGATGAAGAACTGGGGAATGATTGGTGGCATTGCTGCTGTTTTAGCTGCTGGAATATATGTTTTATGGGGCCCCATATCGGACAGAAAGAAATACAGGAAAGGTCTTGTACCTGGCCTGTTAAATTTGGGAAACACCTGTTTTATGAACTCTCTGCTCCAGGGTCTGGCTTCCTGCCCATCTTTCATCAGGTGGCTTGCAGATTTCACGTCAAAGTACAGACAGGAGAACAACACTACAGAGCATCAGCACCTTTCTGTCACCTTGCTTCACCTCCTAAAAGCTCTGTGCAACCAGGAGGGTACTGAGGATGAGGTTTTGGATGCCAGCCCTCTATTGGAAGTCCTCAGGGCTCACAGATGGCAAATCTCTTCCTTTGAAGAGCAGGATGCCCACGAGCTGTTCCATGTGTTAACTTCGTCATTAGAAGATGAGAGGGATCGCCGTCCTCATGTCACTCATCTTTTCGACCTAGATTCTCTGGAATTTCCATTGGAACCTCAAAGGCAAATCCATTGCAGGACACAAGTGCCCATCTATCCTATTCCTAGCCAGTGGAAATCTCAGCATCCATTTCATGGGAGACTCACTAGTAACATGGTGTGCAAGCATTGCCAACACCAGAGTCCAATGAGATATGACACATTTGACAGCCTCTCTTTGAGTATCCCAGTGGCTACATGGGGTCATCCCATAACGCTAGACCAGTGCTTGCAGCATTTCATTTCTACAGAGTCTGTTAAAGATGTTGTTTGTGAAAACTGCACTAAGATCCATGCTGCACAGATACCAAATTCGCAGTCGGTAGAGAATCGCAAAACAACATTTGTGAAGCAGCTGAAGTTGGGGAAGCTCCCTCAGTGTTTGTGCATCCATTTGCAGCGTCTAAGCTGGTCTAATCAGGGCAGTCCCTTAAAACGAAATGAGCACGTACAGTTTAGCGAATTCTTGGCTATGGATCGATTTAAATATCGGATATCTGGATGTTCCACGAGTAAGCAACCTGCTAACCATCTCTCTGCTGCTGAGCAGGAAACAACAGATGGGAAAGAAGGTGGTGCTCAAAATCCCACAATGCCATTTCTGAATGGAGCCTGTTCTACCTCATATATATCTCCTCCATTTACAAGCCCACTCCCAACCAACCCTGAATGGACCTCCTCATCATATCTATTTCGCTTGATGGCGGTAGTAGTTCACCATGGGGATATGCACTCTGGACATTTTGTAACCTACCGGCGTTCTCCTGCTGCCAAGAACCAGAAGCTCACTAGCCAACAATGGCTTTGGATTTCGGATGATACTGTTCGGAGGACAAATTTCCAGGAAGTTCTTTCTTCTAGTGCTTATCTGCTTTTCTATGAGCGTATCCAATCCAATCTTCACCATCCAGAAGACCAAAGGGCAGCAGAAAAGTGAAACCACCACAAGGGAAAAGATTACCCTAAACTTCAGCTTTAAACAAAGCAGGGCAAAGCAGAGACCAGTCTTACCTGACAATGCACGAAAGGGCTTTTTGTTAACAGCTGGTAATTTGTGCTTTATTCCATATTCTGTGATCTTGATGAAATTTATTGCAGGGTGAAAAGAACAACTAAACATGTTATTTAAAAGTAATTCTATTTCATTTTTATTTTTCAAAAGATGAATTAACCACAAGTTTAGACGTCCAAATAGACCAGACTCTGCATATAATTTTAAACTGAACCCAATTATTGCCTTAGGGGCAGAAAACCATAATTCATTTCAGCACTTTGTTAACCACTTACTACTTGTAGTGGAATATTCTAGTCAGTGCTAATAAAGGAAAGTACAGATAGGGCCCCATAAAAGGTGCATATGTGCTACAAATAATAGCCCTTTGTATCTTTTTTTTTAGAGGTAATTATCAAACATATATTGAAATATATTGTCTCACTGACATATTTTGGCACCTATTTTTAAGCACCCGTAAACACGAACATAAACCATTTGGTGTCAGTAAGGCAATTTTTAATAAATTTAAAAAAGCTGCCACAAAACAGTTTTGCAATTAATTTGCCATCATAAAAAAATGTATATATGTACATAAGAGATAATTTATTCTTAAAAATTGTATTATGAAATTCTGTAATTGGAGTTTTAGTTTTCTGATGATGTTAATCTATGGTAATAAAGTTAATTTTGTTAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001097946\|Xenopus laevis ubiquitin specific peptidase 30 (usp30), mRNA GCGTGTTGAAGCCAGCTCGACTTCCTCTTCCTCTCTCTGCTCCATGCCACTTCCTGCTCAGTGATGATGTCACACGCAGTTGCTTTACAGCACAAGCTCTGAAATGTCCTGTGCTCCAGTCAATACTTGGAGCAGGCGGACACATTTGGCAGCTTGTTGCGCTCCTGAGCTTTCTCCTGTCAGTGGCTGGAAATCTTGCGTAGTTCGTTCTCTTCCAACCGGATCGCAAGGGAGGTGTAACATGATGAAGAATTGGGGTATGATTGGTGGCATTGCAGCTGCTTTAGCTGCTGGAATATATGTTTTGTGGGGCCCCATATCGGACAGAAAGAAACACAGGAAAGGTCTTGTACCAGGCCTATTAAATTTGGGAAACACCTGTTTTATGAACTCTCTGCTCCAGGGTCTGGCTTCCTGCCCATCTTTCATCAGCTGGCTGTCGGGTTTCACATCACAGTACAGAGAGGAGCACAGCACTACAGAGCAACGGCACCTTTCTGTTACCTTGCTGAATCTCCTAAAAGCTCTGGCCAACCAGGGGGGTACCGAGGAGGAGGTTTTGGATGCTAGCCCTCTCTTGGAAGTCCTCAGGGCTCACAGATGGCAAATCTCTTCCTTCGAAGAGCAGGTCAGTGATAGAACTCTGACATCTGATCATTATTATCAGGAGATGCAGAAAGGATTACTTCAGCATGGCAGCCTGAATATGGTTCCAACAGAATGTGAAAAACTGGATTGTGGGTGAGGGCAAACAGTTCTAAGCATTACAAAGTCCTACAGATATACCCAGTGCCTACCACTAGCCTCACTGATAAATAGTTAACGTTTAATTGACTTTTTCCATCAGCAAAACTGTAACAGTCCACCTGTTGCTGCTTACAAAAACCTTCAAACTGCTATAATTGAAGCTTTAAAGGCTAATTCAAGTTAGTTCTGTAATCTTACGTGATTTTGCTAAACTATCCGTTTCTGCAGTCCTTGTTTATTTAACTTTTTGTAGTATTATTTTGCTAATTAAAATTTTTGTGAGTGTTGTTGTACTAACATTCTCTGCCTATCTAAGGTGGTGCTATCAAGTGACTAACATTGGCCTACGCATGTTTGTGTATGAACTTTTATTACAGCTAAGGATTCCACTGTTTTTAATTAACTTTTAAATACATGATTTTTTTACTACTTAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001039085\|ubiquitin carboxyl-terminal hydrolase 30 [Xenopus (Silurana) tropicalis] MSWAPVSTWSRRTPLAACCSAPELPPAGAWKACAAGSLRIGPQGRCKMMKNWGMIGGIAAVLAAGIYVLWGPISDRKKYRKGLVPGLLNLGNTCFMNSLLQGLASCPSFIRWLADFTSKYRQENNTTEHQHLSVTLLHLLKALCNQEGTEDEVLDASPLLEVLRAHRWQISSFEEQDAHELFHVLTSSLEDERDRRPHVTHLFDLDSLEFPLEPQRQIHCRTQVPIYPIPSQWKSQHPFHGRLTSNMVCKHCQHQSPMRYDTFDSLSLSIPVATWGHPITLDQCLQHFISTESVKDVVCENCTKIHAAQIPNSQSVENRKTTFVKQLKLGKLPQCLCIHLQRLSWSNQGSPLKRNEHVQFSEFLAMDRFKYRISGCSTSKQPANHLSAAEQETTDGKEGGAQNPTMPFLNGACSTSYISPPFTSPLPTNPEWTSSSYLFRLMAVVVHHGDMHSGHFVTYRRSPAAKNQKLTSQQWLWISDDTVRRTNFQEVLSSSAYLLFYERIQSNLHHPEDQRAAEK UniProtKB	Refseq >NP_001091415\|ubiquitin specific peptidase 30 [Xenopus laevis] MSCAPVNTWSRRTHLAACCAPELSPVSGWKSCVVRSLPTGSQGRCNMMKNWGMIGGIAAALAAGIYVLWGPISDRKKHRKGLVPGLLNLGNTCFMNSLLQGLASCPSFISWLSGFTSQYREEHSTTEQRHLSVTLLNLLKALANQGGTEEEVLDASPLLEVLRAHRWQISSFEEQVSDRTLTSDHYYQEMQKGLLQHGSLNMVPTECEKLDCG

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.19890	Xl.61924 [+] Xl.62507 Xl.79905
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	USP30
mouse		MGI	Usp30	All(3) Targeted, knock Out(1)
zebrafish			usp30

Publications
First:
Most recent:
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Functional Ontologies
GO: Molecular:		cysteine-type endopeptidase activity ubiquitin thiolesterase activity
Biological:		ubiquitin-dependent protein catabolic process
Cellular Component:
EC:		ubiquitin thiolesterase
KOG:		[O] Ubiquitin-specific protease (alt_id KOG:1867)

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.19890.1.S1_at
Affymetrix 2.0			Xl2.51383.1.S1_at [+] Xl2.52555.1.S1_at

Symbol legend[+]