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Summary Expression Phenotypes Gene Literature (0) GO Terms (4) Nucleotides (85) Proteins (51) Interactants (2) Wiki
XB-GENEPAGE-1014286

Show:     All X. tropicalis X. laevis

Nucleotide sequences for ttc39a - All

RefSeq mRNAs(7)
Models - Gene (26)
Models - mRNA (33)
mRNAs (8)
ESTs (6)

RefSeq mRNAs (7)

Accession Version Protein Name Length Protein Species
NM_001016774 NM_001016774.2 tetratricopeptide repeat protein 39A 2238 bp NP_001016774 X. tropicalis
XM_018260883 XM_018260883.2 tetratricopeptide repeat protein 39A isoform X1 4798 bp XP_018116372 X. laevis.S
XM_018260884 XM_018260884.2 tetratricopeptide repeat protein 39A isoform X2 4790 bp XP_018116373 X. laevis.S
XM_018258410 XM_018258410.2 tetratricopeptide repeat protein 39A isoform X1 3482 bp XP_018113899 X. laevis.L
XM_018258411 XM_018258411.2 tetratricopeptide repeat protein 39A isoform X2 3451 bp XP_018113900 X. laevis.L
XM_018258412 XM_018258412.2 tetratricopeptide repeat protein 39A isoform X3 3427 bp XP_018113901 X. laevis.L
XM_041590456 XM_041590456.1 XP_041446390.1 tetratricopeptide repeat protein 39A isoform X4 3307 bp XP_041446390 X. laevis.L

Models - Gene (26)

Source Version Model Species
NCBI 10.1 XBXL10_1g21702 X. laevis.S
NCBI 10.1 XBXL10_1g19243 X. laevis.L
NCBI 10.0 XBXT10g013413 X. tropicalis
ENSEMBL 10.0 ttc39a X. tropicalis
Xenbase 9.2 gene20269 X. laevis.S
Xenbase 9.2 gene12715 X. laevis.L
JGI 9.1 Xelaev18025267m.g X. laevis.S
JGI 9.1 Xelaev18023166m.g X. laevis.L
Xenbase 9.1 gene7229 X. tropicalis
ENSEMBL 9.1 ttc39a X. tropicalis
JGI 7.1 Xetro.D01973 X. tropicalis
JGI 6.0 XeXenL6RMv10008644m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000002835 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_1000121 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_1000036 X. tropicalis
JGI 4.1 estExt_Genewise1.C_10424 X. tropicalis
JGI 4.1 estExt_Genewise1.C_10114 X. tropicalis
JGI 4.1 estExt_Genewise1.C_10008 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_10061 X. tropicalis
JGI 4.1 gw1.1.114.1 X. tropicalis
JGI 4.1 gw1.1.8.1 X. tropicalis
JGI 4.1 gw1.1.426.1 X. tropicalis
JGI 4.1 e_gw1.1.8.1 X. tropicalis
JGI 4.1 e_gw1.1.426.1 X. tropicalis
JGI 4.1 e_gw1.1.114.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_1000017 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA35555 X. laevis.L
NCBI 10.1 XBmRNA40228 X. laevis.S
ENSEMBL 10.0 ENSXETT00000006193 X. tropicalis
NCBI 10.0 mRNA066436 X. tropicalis
Xenbase 9.2 rna36936 X. laevis.L
Xenbase 9.2 rna59170 X. laevis.S
Xenbase 9.1 rna23361 X. tropicalis
JGI 9.1 Xelaev18023166m X. laevis.L
JGI 9.1 Xelaev18025267m X. laevis.S
ENSEMBL 9.1 ENSXETT00000089482 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082608 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071863 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071107 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070158 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060482 X. tropicalis
ENSEMBL 9.1 ENSXETT00000006193 X. tropicalis
JGI 7.1 Xetro.D01973.1 X. tropicalis
JGI 7.1 Xetro.D01973.2 X. tropicalis
JGI 6.0 XeXenL6RMv10008644m X. laevis.S
ENSEMBL 4.1 ENSXETT00000006193 X. tropicalis
JGI 4.1 gw1.1.8.1 X. tropicalis
JGI 4.1 gw1.1.426.1 X. tropicalis
JGI 4.1 gw1.1.114.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_1000017 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_1000036 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_1000121 X. tropicalis
JGI 4.1 estExt_Genewise1.C_10424 X. tropicalis
JGI 4.1 estExt_Genewise1.C_10114 X. tropicalis
JGI 4.1 estExt_Genewise1.C_10008 X. tropicalis
JGI 4.1 e_gw1.1.8.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_10061 X. tropicalis
JGI 4.1 e_gw1.1.426.1 X. tropicalis
JGI 4.1 e_gw1.1.114.1 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
TGas136f11 CR855725 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001016774 X. tropicalis
XM_018260883 X. laevis.S
XM_018260884 X. laevis.S
XM_018258410 X. laevis.L
XM_018258411 X. laevis.L
XM_018258412 X. laevis.L
XM_041590456 X. laevis.L

ESTs (6)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas136f11 AL967745 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu047a14 AL659488 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA044h09 CR427006 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas136f11 BX761431 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:3473147 BI348398 5' X. laevis.S Wellcome CRC pRN3 oocyte oocyte unspecified stage
PBX0085C01 AW639631 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage