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Summary Expression Phenotypes Gene Literature (4) GO Terms (11) Nucleotides (310) Proteins (91) Interactants (237) Wiki
XB-GENEPAGE-1015604

Show:     All X. tropicalis X. laevis

Nucleotide sequences for rnf38 - All

RefSeq mRNAs(21)
Models - Gene (34)
Models - mRNA (47)
mRNAs (26)
ESTs (130)

RefSeq mRNAs (21)

Accession Version Protein Name Length Protein Species
NM_001030334 NM_001030334.2 E3 ubiquitin-protein ligase RNF38 1887 bp NP_001025505 X. tropicalis
XM_012963641 XM_012963641.2 E3 ubiquitin-protein ligase RNF38 isoform X1 7628 bp XP_012819095 X. tropicalis
XM_012963652 XM_012963652.2 E3 ubiquitin-protein ligase RNF38 isoform X2 7622 bp XP_012819106 X. tropicalis
XM_012963661 XM_012963661.2 E3 ubiquitin-protein ligase RNF38 isoform X3 7598 bp XP_012819115 X. tropicalis
XM_012963664 XM_012963664.2 E3 ubiquitin-protein ligase RNF38 isoform X4 7592 bp XP_012819118 X. tropicalis
XM_012963668 XM_012963668.3 E3 ubiquitin-protein ligase RNF38 isoform X5 6764 bp XP_012819122 X. tropicalis
XM_018256545 XM_018256545.2 E3 ubiquitin-protein ligase RNF38 isoform X5 1800 bp XP_018112034 X. laevis.L
XM_018256556 XM_018256556.2 E3 ubiquitin-protein ligase RNF38 isoform X6 1770 bp XP_018112045 X. laevis.L
XM_041562685 XM_041562685.1 XP_041418619.1 E3 ubiquitin-protein ligase RNF38 isoform X1 2857 bp XP_041418619 X. laevis.L
XM_041562691 XM_041562691.1 XP_041418625.1 E3 ubiquitin-protein ligase RNF38 isoform X2 2851 bp XP_041418625 X. laevis.L
XM_041562694 XM_041562694.1 XP_041418628.1 E3 ubiquitin-protein ligase RNF38 isoform X3 2827 bp XP_041418628 X. laevis.L
XM_041562698 XM_041562698.1 XP_041418632.1 E3 ubiquitin-protein ligase RNF38 isoform X4 2821 bp XP_041418632 X. laevis.L
XM_018239931 XM_018239931.2 E3 ubiquitin-protein ligase RNF38 isoform X4 5999 bp XP_018095420 X. laevis.S
XM_018239932 XM_018239932.2 E3 ubiquitin-protein ligase RNF38 isoform X7 5965 bp XP_018095421 X. laevis.S
XM_018239935 XM_018239935.2 E3 ubiquitin-protein ligase RNF38 isoform X9 5564 bp XP_018095424 X. laevis.S
XM_041579990 XM_041579990.1 XP_041435924.1 E3 ubiquitin-protein ligase RNF38 isoform X1 6035 bp XP_041435924 X. laevis.S
XM_041579991 XM_041579991.1 XP_041435925.1 E3 ubiquitin-protein ligase RNF38 isoform X2 6019 bp XP_041435925 X. laevis.S
XM_041579992 XM_041579992.1 XP_041435926.1 E3 ubiquitin-protein ligase RNF38 isoform X3 7141 bp XP_041435926 X. laevis.S
XM_041579993 XM_041579993.1 XP_041435927.1 E3 ubiquitin-protein ligase RNF38 isoform X5 5995 bp XP_041435927 X. laevis.S
XM_041579994 XM_041579994.1 XP_041435928.1 E3 ubiquitin-protein ligase RNF38 isoform X6 5975 bp XP_041435928 X. laevis.S
XM_041579995 XM_041579995.1 XP_041435929.1 E3 ubiquitin-protein ligase RNF38 isoform X8 5686 bp XP_041435929 X. laevis.S

Models - Gene (34)

Source Version Model Species
NCBI 10.1 XBXL10_1g4610 X. laevis.S
NCBI 10.1 XBXL10_1g1820 X. laevis.L
NCBI 10.0 XBXT10g000577 X. tropicalis
ENSEMBL 10.0 rnf38 X. tropicalis
Xenbase 9.2 gene10742 X. laevis.L
Xenbase 9.2 gene13432 X. laevis.S
JGI 9.1 Xelaev18006546m.g X. laevis.L
JGI 9.1 Xelaev18001217m.g X. laevis.S
Xenbase 9.1 gene4300 X. tropicalis
ENSEMBL 9.1 rnf38 X. tropicalis
JGI 8.0 Xetrov14003136m.g X. tropicalis
JGI 7.2 Xelaev16005976m.g X. laevis.L
JGI 7.1 Xetro.A01886 X. tropicalis
JGI 6.0 XeXenL6RMv10010841m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000006554 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1750040 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1750009 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_175000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_175000039 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_175000040 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_175000009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1750039 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1750010 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1750101 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1750099 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1750041 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1750016 X. tropicalis
JGI 4.1 gw1.175.99.1 X. tropicalis
JGI 4.1 gw1.175.41.1 X. tropicalis
JGI 4.1 gw1.175.101.1 X. tropicalis
JGI 4.1 e_gw1.175.99.1 X. tropicalis
JGI 4.1 e_gw1.175.41.1 X. tropicalis
JGI 4.1 e_gw1.175.101.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_175000003 X. tropicalis

mRNAs based on gene models(47)

Source Version Model Species
NCBI 10.1 XBmRNA8543 X. laevis.S
NCBI 10.1 XBmRNA3236 X. laevis.L
ENSEMBL 10.0 ENSXETT00000082373 X. tropicalis
ENSEMBL 10.0 ENSXETT00000014343 X. tropicalis
ENSEMBL 10.0 ENSXETT00000095876 X. tropicalis
NCBI 10.0 mRNA002922 X. tropicalis
ENSEMBL 10.0 ENSXETT00000094410 X. tropicalis
Xenbase 9.2 rna39087 X. laevis.S
Xenbase 9.2 rna31217 X. laevis.L
Xenbase 9.1 rna14030 X. tropicalis
JGI 9.1 Xelaev18001217m X. laevis.S
ENSEMBL 9.1 ENSXETT00000014343 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082373 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094410 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094907 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095876 X. tropicalis
JGI 9.1 Xelaev18006546m X. laevis.L
JGI 8.0 Xetrov14003136m X. tropicalis
JGI 7.2 Xelaev16005976m X. laevis.L
JGI 7.1 Xetro.A01886.2 X. tropicalis
JGI 7.1 Xetro.A01886.3 X. tropicalis
JGI 7.1 Xetro.A01886.4 X. tropicalis
JGI 7.1 Xetro.A01886.5 X. tropicalis
JGI 7.1 Xetro.A01886.1 X. tropicalis
JGI 7.1 Xetro.A01886.6 X. tropicalis
JGI 7.1 Xetro.A01886.7 X. tropicalis
JGI 6.0 XeXenL6RMv10010841m X. laevis.L
JGI 4.1 gw1.175.41.1 X. tropicalis
JGI 4.1 gw1.175.99.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1750041 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1750016 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1750009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1750040 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1750039 X. tropicalis
JGI 4.1 e_gw1.175.101.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1750010 X. tropicalis
ENSEMBL 4.1 ENSXETT00000014343 X. tropicalis
JGI 4.1 e_gw1.175.99.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1750099 X. tropicalis
JGI 4.1 e_gw1.175.41.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1750101 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_175000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_175000039 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_175000040 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_175000009 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_175000003 X. tropicalis
JGI 4.1 gw1.175.101.1 X. tropicalis

mRNAs from cDNA libraries (26)

Clone Accession Species Library Anatomy Stage
TEgg056n21 CR760616 X. tropicalis
TGas057p22 CR762191 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu107k03 CU075755 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001030334 X. tropicalis
XM_012963641 X. tropicalis
XM_012963652 X. tropicalis
XM_012963661 X. tropicalis
XM_012963664 X. tropicalis
XM_012963668 X. tropicalis
IMAGE:6318647 BC130124 X. laevis.L
IMAGE:8330050 BC160676 X. laevis.L
XM_018256545 X. laevis.L
XM_018256556 X. laevis.L
XM_041562685 X. laevis.L
XM_041562691 X. laevis.L
XM_041562694 X. laevis.L
XM_041562698 X. laevis.L
XM_018239931 X. laevis.S
XM_018239932 X. laevis.S
XM_018239935 X. laevis.S
XM_041579990 X. laevis.S
XM_041579991 X. laevis.S
XM_041579992 X. laevis.S
XM_041579993 X. laevis.S
XM_041579994 X. laevis.S
XM_041579995 X. laevis.S

ESTs (130)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7569126 CX457806 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7535805 CX476606 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAO7001 CX940202 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7567044 CX507777 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAO5342 CX937199 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7697962 CX930169 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7693152 CX920080 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7665181 CX850057 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TTpA077l17 BX732819 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu088h20 AL800894 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu135g10 AL796675 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu107k03 AL793232 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu121h14 AL788372 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu072g05 AL785429 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064p20 AL783301 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu079h23 AL776160 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu042n24 AL660250 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu046l14 AL659084 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu046l15 AL658901 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu015b24 AL636021 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st106g13 DC192834 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6990678 CF217328 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:8853586 EL815518 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7762075 DR883891 5' X. tropicalis NIH_XGC_tropTe6 testis frog
IMAGE:7512819 CX741323 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:8915074 EL827812 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7515507 CX745725 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
CAAO12574 CX963606 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7708643 CX961721 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO9524 CX957962 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO9229 CX957418 5' X. tropicalis NIH_XGC_tropTe5 testis frog
TGas034n11 AL649276 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas061d13 AL680293 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas057p22 AL681679 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas066o16 AL682531 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas057d03 AL682709 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas102c10 AL964968 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas108m22 AL969874 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8857810 EL821704 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8854333 EL815942 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
st30a23 DC171983 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st31a10 DC172265 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st6n04 DC174957 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st7n04 DC175247 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st38e16 DC176227 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7542333 CX449018 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
st74a01 DC184956 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7567044 CX507776 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst30a23 DC141675 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst31a10 DC141963 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst6n04 DC144629 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst7n04 DC144917 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst38e16 DC145927 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst74a01 DC154808 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst75a01 DC155069 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst106g13 DC162864 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6990678 CF217329 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7512819 CX741322 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7515507 CX745724 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
TGas057d03 BX746038 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas066o16 BX746877 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas057p22 BX747405 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas061d13 BX747605 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas102c10 BX753704 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas108m22 BX754046 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7542333 CX449017 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7569126 CX457805 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu079h23 BX686003 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu072g05 BX688976 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064p20 BX689558 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu107k03 BX692602 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu088h20 BX696784 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064p19 BX700205 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu121h14 BX700742 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTpA077l17 BX732820 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7687468 CX909238 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7693152 CX920079 3' X. tropicalis NIH_XGC_tropTe4 testis frog
CAAO5342 CX937198 3' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO9524 CX957961 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7762075 DR883890 3' X. tropicalis NIH_XGC_tropTe6 testis frog
IMAGE:8853586 EL815519 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8854333 EL815943 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8857810 EL821705 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8915074 EL827813 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8922336 EL837076 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
XL050i20 BJ042070 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
xlk134l07ex DC046760 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk152m17ex DC052588 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk158d08ex DC063507 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:2942606 AW460258 5' X. laevis.L Xenla 13LiCl whole organism NF stage 13
IMAGE:6866526 CA794148 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
XL073f24 BJ061559 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3400846 BG037477 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
XL413n21ex BP673471 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL100d22 BJ067316 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
xl313k22 DC127142 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL409o20ex BP710304 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL515f02ex BP705573 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL512j05ex BP704570 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5