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Summary Expression Phenotypes Gene Literature (40) GO Terms (46) Nucleotides (179) Proteins (51) Interactants (525) Wiki
XB-GENEPAGE-480485

Show:     All X. tropicalis X. laevis

Nucleotide sequences for irx3 - All

RefSeq mRNAs(4)
Models - Gene (31)
Models - mRNA (33)
mRNAs (12)
ESTs (87)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001001216 NM_001001216.1 iroquois-class homeodomain protein irx-3 1909 bp NP_001001216 X. tropicalis
NM_001090735 NM_001090735.1 iroquois-class homeodomain protein irx-3 1912 bp NP_001084204 X. laevis.L
XM_018260410 XM_018260410.2 iroquois-class homeodomain protein irx-3-like isoform X1 1930 bp XP_018115899 X. laevis.S
XM_018260411 XM_018260411.2 iroquois-class homeodomain protein irx-3-like isoform X2 1509 bp XP_018115900 X. laevis.S

Models - Gene (31)

Source Version Model Species
NCBI 10.1 XBXL10_1g21115 X. laevis.S
NCBI 10.1 XBXL10_1g18499 X. laevis.L
NCBI 10.0 XBXT10g014441 X. tropicalis
ENSEMBL 10.0 irx3 X. tropicalis
Xenbase 9.2 gene15512 X. laevis.S
Xenbase 9.2 gene17580 X. laevis.L
JGI 9.1 Xelaev18024688m.g X. laevis.S
JGI 9.1 Xelaev18022387m.g X. laevis.L
Xenbase 9.1 gene1175 X. tropicalis
ENSEMBL 9.1 irx3 X. tropicalis
JGI 8.0 Xetrov14018211m.g X. tropicalis
JGI 7.2 Xelaev16041215m.g X. laevis.L
JGI 7.1 Xetro.D00521 X. tropicalis
JGI 6.0 XeXenL6RMv10039396m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000005818 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_146000020 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000059 X. tropicalis
JGI 4.1 gw1.146.134.1 X. tropicalis
JGI 4.1 gw1.146.135.1 X. tropicalis
JGI 4.1 e_gw1.146.134.1 X. tropicalis
JGI 4.1 e_gw1.146.135.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1460041 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1460133 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1460134 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1460013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1460057 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1460058 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1460019 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_146000012 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_146000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000058 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA39109 X. laevis.S
NCBI 10.1 XBmRNA34039 X. laevis.L
ENSEMBL 10.0 ENSXETT00000012797 X. tropicalis
ENSEMBL 10.0 ENSXETT00000108096 X. tropicalis
NCBI 10.0 mRNA071444 X. tropicalis
Xenbase 9.2 rna51345 X. laevis.L
Xenbase 9.2 rna45294 X. laevis.S
Xenbase 9.1 rna3763 X. tropicalis
JGI 9.1 Xelaev18024688m X. laevis.S
JGI 9.1 Xelaev18022387m X. laevis.L
ENSEMBL 9.1 ENSXETT00000012797 X. tropicalis
JGI 8.0 Xetrov14018211m X. tropicalis
JGI 7.2 Xelaev16041215m X. laevis.L
JGI 7.1 Xetro.D00521.1 X. tropicalis
JGI 7.1 Xetro.D00521.2 X. tropicalis
JGI 6.0 XeXenL6RMv10039396m X. laevis.L
JGI 4.1 estExt_fgenesh1_pm.C_1460019 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1460058 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1460057 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1460013 X. tropicalis
JGI 4.1 e_gw1.146.135.1 X. tropicalis
JGI 4.1 e_gw1.146.134.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000012797 X. tropicalis
JGI 4.1 gw1.146.134.1 X. tropicalis
JGI 4.1 gw1.146.135.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_146000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_146000020 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000058 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000059 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_146000013 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1460134 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1460133 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1460041 X. tropicalis

mRNAs from cDNA libraries (12)

Clone Accession Species Library Anatomy Stage
irx3-HAR123 BC067972 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
irx3-HAR123 BC067972 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:5335930 BC067972 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:5335930 BC067972 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TNeu131p22 CR760274 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001001216 X. tropicalis
AF027175 X. laevis.L
IMAGE:7982631 BC108595 X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
NM_001090735 X. laevis.L
546_2D23 DQ096897 X. laevis.S
XM_018260410 X. laevis.S
XM_018260411 X. laevis.S

ESTs (87)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas002d24 AL595196 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas142j06 AL963094 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA005d13 CR589206 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA012p20 BX707238 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA046l13 BX745415 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xtbs27B23 CN086665 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
CABC4458 DR833310 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
xthr13B16 CN097899 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr20O19 CN102760 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7531084 CX420647 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu021l04 AL636423 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064d14 AL783232 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu133p06 AL789320 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu134g13 AL789805 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu090k14 AL800569 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu131p22 AL803646 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7516159 CX746848 5' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
irx3-HAR106 BQ394718 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:9011449 EL856566 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
st45g09 DC177967 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:9011447 EL856553 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
xthr30A13 CN107296 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr35D16 CN110676 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas018g08 AL629468 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
irx3-HAR123 BQ520889 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA028l17 CR411269 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA029i13 CR419656 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA022b21 CR438009 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA079c18 CR439384 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA013g20 CR565850 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TGas122g02 AL972865 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas142j06 BX757959 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7531084 CX420646 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
irx3-HAR123 BQ520888 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TNeu064d14 BX687123 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xthr20O19 CN102759 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TNeu090k14 BX695351 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA029i13 CR419657 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xthr30A13 CN107295 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TNeu131p22 BX697804 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu134g13 BX699603 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
THdA013g20 CR565851 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:9011447 EL856554 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
irx3-HAR106 BQ394717 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TTpA012p20 BX707239 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xthr35D16 CN110675 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTpA046l13 BX745416 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xtbs27B23 CN086664 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:9011449 EL856567 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
CABC4458 DR833309 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
rst45g09 DC147684 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
xthr13B16 CN097898 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8320159 DY558245 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:6865752 CA988468 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
BG409700 BG409700 5' X. laevis.L Stage 10+ Gastrula Library whole organism NF stage 10 to NF stage 10.5
XENOPUS_SOURCE_ID:xlnga003g16 AW200541 5' X. laevis.L normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5
xl276m17 DC116649 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk51f06ex DC032872 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk52p06ex DC033397 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk122g05ex DC042774 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk124g18ex DC043434 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk153l13ex DC052884 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk65p07ex DC056129 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk81d12ex DC061662 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk154k19ex DC062427 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
p14g9 AU245357 5' X. laevis.L Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
IMAGE:7982563 DR715974 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7978975 DR717396 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7980407 DR723829 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7979474 DR723833 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7979577 DR724126 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7982631 DR725260 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7982670 DR727464 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8319175 DY547819 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8320150 DY548459 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8318228 DY553318 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:3401938 BE679549 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:8319537 DY564495 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8322378 DY567171 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8321663 DY568577 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7980407 DR723943 3' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
rxlk154k19ex DC028909 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk81d12ex DC028140 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk124g18ex DC010319 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk52p06ex DC000607 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxl276m17 DC081689 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XENOPUS_SOURCE_ID:xlnga003g16 AW199471 3' X. laevis.L normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5