Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (275) GO Terms (43) Nucleotides (594) Proteins (50) Interactants (1492) Wiki
XB-GENEPAGE-484814

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sox3 - All

RefSeq mRNAs(3)
Models - Gene (33)
Models - mRNA (33)
mRNAs (11)
ESTs (408)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001007501 NM_001007501.1 transcription factor Sox-3 1708 bp NP_001007502 X. tropicalis
NM_001090679 NM_001090679.1 transcription factor Sox-3-A 1642 bp NP_001084148 X. laevis.S
NM_001173404 NM_001173404.1 transcription factor Sox-3-B 1619 bp NP_001166875 X. laevis.L

Models - Gene (33)

Source Version Model Species
NCBI 10.1 XBXL10_1g35158 X. laevis.L
NCBI 10.1 XBXL10_1g38013 X. laevis.S
NCBI 10.0 XBXT10g008032 X. tropicalis
ENSEMBL 10.0 sox3 X. tropicalis
Xenbase 9.2 gene10152 X. laevis.L
Xenbase 9.2 gene13271 X. laevis.S
JGI 9.1 Xelaev18038842m.g X. laevis.L
JGI 9.1 Xelaev18042169m.g X. laevis.S
Xenbase 9.1 gene1106 X. tropicalis
JGI 8.0 Xetrov14033323m.g X. tropicalis
JGI 7.2 Xelaev16015647m.g X. laevis.S
JGI 7.1 Xetro.H00710 X. tropicalis
JGI 6.0 XeXenL6RMv10047736m.g X. laevis.S
JGI 6.0 XeXenL6RMv10039689m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000007607 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_62000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_62000022 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_62000023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_620004 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_620007 X. tropicalis
JGI 4.1 e_gw1.62.20.1 X. tropicalis
JGI 4.1 e_gw1.62.63.1 X. tropicalis
JGI 4.1 e_gw1.62.64.1 X. tropicalis
JGI 4.1 gw1.62.20.1 X. tropicalis
JGI 4.1 gw1.62.63.1 X. tropicalis
JGI 4.1 gw1.62.64.1 X. tropicalis
JGI 4.1 TIM_fgenesh1_kg.C_scaffold_62000001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_620020 X. tropicalis
JGI 4.1 estExt_Genewise1.C_620063 X. tropicalis
JGI 4.1 estExt_Genewise1.C_620064 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_620001 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_620022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_620023 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA71859 X. laevis.S
NCBI 10.1 XBmRNA66382 X. laevis.L
ENSEMBL 10.0 ENSXETT00000108591 X. tropicalis
NCBI 10.0 mRNA039881 X. tropicalis
Xenbase 9.2 rna29524 X. laevis.L
Xenbase 9.2 rna38625 X. laevis.S
JGI 9.1 Xelaev18038842m X. laevis.L
Xenbase 9.1 rna3540 X. tropicalis
JGI 9.1 Xelaev18042169m X. laevis.S
JGI 8.0 Xetrov14033323m X. tropicalis
JGI 7.2 Xelaev16015647m X. laevis.S
JGI 7.1 Xetro.H00710.1 X. tropicalis
JGI 6.0 XeXenL6RMv10039689m X. laevis.S
JGI 6.0 XeXenL6RMv10047736m X. laevis.S
JGI 4.1 fgenesh1_pg.C_scaffold_62000023 X. tropicalis
JGI 4.1 e_gw1.62.20.1 X. tropicalis
JGI 4.1 gw1.62.63.1 X. tropicalis
JGI 4.1 gw1.62.64.1 X. tropicalis
JGI 4.1 TIM_fgenesh1_kg.C_scaffold_62000001 X. tropicalis
JGI 4.1 gw1.62.20.1 X. tropicalis
JGI 4.1 e_gw1.62.63.1 X. tropicalis
JGI 4.1 e_gw1.62.64.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000016558 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_620001 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_620022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_620023 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_620004 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_620007 X. tropicalis
JGI 4.1 estExt_Genewise1.C_620020 X. tropicalis
JGI 4.1 estExt_Genewise1.C_620063 X. tropicalis
JGI 4.1 estExt_Genewise1.C_620064 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_62000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_62000022 X. tropicalis

mRNAs from cDNA libraries (11)

Clone Accession Species Library Anatomy Stage
IMAGE:6979162 BC079938 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TGas079n14 CT030436 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001007501 X. tropicalis
AB000825 X. laevis.S
30F5-2 AJ009310 X. laevis.S
IMAGE:6635221 BC072222 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
NM_001090679 X. laevis.S
Y07542 Y07542 X. laevis.S
IMAGE:6322726 BC089283 X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
NM_001173404 X. laevis.L
X65654 X65654 X. laevis.L

ESTs (408)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
st109a16 DC194163 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st105l08 DC191913 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st105d21 DC191799 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st104n07 DC191700 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st103i02 DC191377 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st102i02 DC191155 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st100i02 DC190719 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st100e16 DC190663 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st82k13 DC187142 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st79p23 DC186499 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st79b16 DC186268 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st51p18 DC179477 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st43a19 DC177401 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st41a05 DC176970 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st38k20 DC176349 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st4b11 DC174166 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st35a17 DC173313 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st34c24 DC173097 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st31k12 DC172435 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st2n18 DC171925 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st2a13 DC171680 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st29m15 DC171619 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st28l02 DC171290 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st21e11 DC169177 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st20h09 DC168945 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st19a22 DC168283 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st10f20 DC165703 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st10c05 DC165629 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7513182 CX742167 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7514297 CX743782 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
TTpA021c23 BX705637 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA045p11 BX725069 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA067m21 BX735627 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:5382995 BQ394671 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:5383055 BQ394706 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:5383825 BQ396380 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TNeu084m04 AL804093 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu098h23 AL802996 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu124c09 AL802352 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu143h22 AL796199 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu119d09 AL792356 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu108j18 AL790770 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu108h20 AL790759 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu096f04 AL786894 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu073n09 AL782099 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu066g23 AL778279 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu055m07 AL676839 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu061b17 AL673881 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu030g15 AL650772 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu029i20 AL650524 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6995582 CF239260 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
THdA048l08 CR584250 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:6989849 CF219296 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6989849 CF219297 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6986301 CF222040 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
THdA030g12 CR582534 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA032e20 CR577975 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA032e18 CR577974 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA019i12 CR571682 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8890659 EL850355 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
THdA017m11 CR568321 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA014j19 CR565261 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:9010565 EL854672 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
THdA004m10 CR563989 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7525092 CX439810 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7537433 CX446329 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7538254 CX450617 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7539387 CX452163 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7570457 CX454992 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7522714 CX471996 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7536378 CX478009 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520677 CX481076 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565528 CX482542 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7566149 CX482870 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7549906 CX485432 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:9016134 EL863310 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9017108 EL864527 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9020182 EL869589 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7571932 CX513173 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7531184 CX420677 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7528776 CX425832 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7529630 CX426630 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7534477 CX428778 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7532779 CX433320 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7573238 CX436871 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524598 CX439553 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas143k23 AL968679 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas137b22 AL966625 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas083b05 AL966152 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas101i10 AL965067 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas143d24 AL964426 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas083c06 AL964132 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas090n04 AL964017 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas090l02 AL964006 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas136e10 AL963440 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas085e24 AL960548 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas100c19 AL956115 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas074n04 AL782451 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas079n14 AL774680 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12