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Summary Expression Phenotypes Gene Literature (12) GO Terms (21) Nucleotides (140) Proteins (73) Interactants (258) Wiki
XB-GENEPAGE-487031

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sox5 - All

RefSeq mRNAs(16)
Models - Gene (25)
Models - mRNA (30)
mRNAs (21)
ESTs (41)

RefSeq mRNAs (16)

Accession Version Protein Name Length Protein Species
NM_001128658 NM_001128658.1 transcription factor Sox-5 2978 bp NP_001122130 X. tropicalis
XM_031897504 XM_031897504.1 XP_031753364.1 transcription factor Sox-5 isoform X1 3414 bp XP_031753364 X. tropicalis
XM_031897505 XM_031897505.1 XP_031753365.1 transcription factor Sox-5 isoform X2 2203 bp XP_031753365 X. tropicalis
XM_031897506 XM_031897506.1 XP_031753366.1 transcription factor Sox-5 isoform X3 2912 bp XP_031753366 X. tropicalis
NM_001174037 NM_001174037.1 SRY-box 5 S homeolog 2552 bp NP_001167508 X. laevis.S
XM_018254025 XM_018254025.2 SRY-box 5 S homeolog isoform X1 4126 bp XP_018109514 X. laevis.S
XM_018254026 XM_018254026.2 SRY-box 5 S homeolog isoform X2 4097 bp XP_018109515 X. laevis.S
XM_018254027 XM_018254027.2 SRY-box 5 S homeolog isoform X4 3642 bp XP_018109516 X. laevis.S
XM_041587485 XM_041587485.1 XP_041443419.1 SRY-box 5 S homeolog isoform X3 3981 bp XP_041443419 X. laevis.S
XM_041587486 XM_041587486.1 XP_041443420.1 SRY-box 5 S homeolog isoform X5 3481 bp XP_041443420 X. laevis.S
XM_041587487 XM_041587487.1 XP_041443421.1 SRY-box 5 S homeolog isoform X6 3512 bp XP_041443421 X. laevis.S
XM_018251830 XM_018251830.2 transcription factor Sox-5-like isoform X1 4519 bp XP_018107319 X. laevis.L
XM_018251831 XM_018251831.2 transcription factor Sox-5-like isoform X2 4489 bp XP_018107320 X. laevis.L
XM_018251832 XM_018251832.2 transcription factor Sox-5-like isoform X4 2206 bp XP_018107321 X. laevis.L
XM_018251834 XM_018251834.2 transcription factor Sox-5-like isoform X5 4308 bp XP_018107323 X. laevis.L
XM_041585795 XM_041585795.1 XP_041441729.1 transcription factor Sox-5-like isoform X3 4432 bp XP_041441729 X. laevis.L

Models - Gene (25)

Source Version Model Species
NCBI 10.1 XBXL10_1g14948 X. laevis.S
NCBI 10.1 XBXL10_1g11362 X. laevis.L
NCBI 10.0 XBXT10g003645 X. tropicalis
ENSEMBL 10.0 sox5 X. tropicalis
Xenbase 9.2 gene42512 X. laevis.S
Xenbase 9.2 gene39640 X. laevis.L
JGI 9.1 Xelaev18019705m.g X. laevis.S
JGI 9.1 Xelaev18016612m.g X. laevis.L
Xenbase 9.1 gene28731 X. tropicalis
ENSEMBL 9.1 sox5 X. tropicalis
JGI 7.2 Xelaev16069287m.g X. laevis.S
JGI 7.1 Xetro.K02239 X. tropicalis
JGI 6.0 XeXenL6RMv10017467m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000026458 X. tropicalis
JGI 4.1 TIM_1004485456 X. tropicalis
JGI 4.1 gw1.1126.27.1 X. tropicalis
JGI 4.1 e_gw1.1126.3.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_1126000002 X. tropicalis
JGI 4.1 e_gw1.1126.21.1 X. tropicalis
JGI 4.1 e_gw1.1126.20.1 X. tropicalis
JGI 4.1 gw1.1126.3.1 X. tropicalis
JGI 4.1 gw1.1126.21.1 X. tropicalis
JGI 4.1 gw1.1126.20.1 X. tropicalis
JGI 4.1 e_gw1.1126.27.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_1126000001 X. tropicalis

mRNAs based on gene models(30)

Source Version Model Species
NCBI 10.1 XBmRNA21350 X. laevis.L
NCBI 10.1 XBmRNA27818 X. laevis.S
NCBI 10.0 mRNA018431 X. tropicalis
ENSEMBL 10.0 ENSXETT00000055793 X. tropicalis
ENSEMBL 10.0 ENSXETT00000100581 X. tropicalis
ENSEMBL 10.0 ENSXETT00000107892 X. tropicalis
ENSEMBL 10.0 ENSXETT00000109088 X. tropicalis
Xenbase 9.2 rna85454 X. laevis.S
Xenbase 9.2 rna81290 X. laevis.L
Xenbase 9.1 rna55583 X. tropicalis
JGI 9.1 Xelaev18016612m X. laevis.L
JGI 9.1 Xelaev18019705m X. laevis.S
ENSEMBL 9.1 ENSXETT00000100581 X. tropicalis
ENSEMBL 9.1 ENSXETT00000055793 X. tropicalis
JGI 7.2 Xelaev16069287m X. laevis.S
JGI 7.1 Xetro.K02239.1 X. tropicalis
JGI 7.1 Xetro.K02239.2 X. tropicalis
JGI 6.0 XeXenL6RMv10017467m X. laevis.S
JGI 4.1 gw1.1126.21.1 X. tropicalis
JGI 4.1 gw1.1126.27.1 X. tropicalis
JGI 4.1 gw1.1126.3.1 X. tropicalis
JGI 4.1 TIM_1004485456 X. tropicalis
JGI 4.1 gw1.1126.20.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_1126000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_1126000002 X. tropicalis
JGI 4.1 e_gw1.1126.27.1 X. tropicalis
JGI 4.1 e_gw1.1126.3.1 X. tropicalis
JGI 4.1 e_gw1.1126.21.1 X. tropicalis
JGI 4.1 e_gw1.1126.20.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000055793 X. tropicalis

mRNAs from cDNA libraries (21)

Clone Accession Species Library Anatomy Stage
IMAGE:7604115 BC167694 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA019c19 CU075480 X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
NM_001128658 X. tropicalis
XM_031897504 X. tropicalis
XM_031897505 X. tropicalis
XM_031897506 X. tropicalis
AB682776 X. laevis.S
IMAGE:7974690 BC142559 X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
NM_001174037 X. laevis.S
X65653 X65653 X. laevis.S
XM_018254025 X. laevis.S
XM_018254026 X. laevis.S
XM_018254027 X. laevis.S
XM_041587485 X. laevis.S
XM_041587486 X. laevis.S
XM_041587487 X. laevis.S
XM_018251830 X. laevis.L
XM_018251831 X. laevis.L
XM_018251832 X. laevis.L
XM_018251834 X. laevis.L
XM_041585795 X. laevis.L

ESTs (41)

Clone Accession 5'/3' Species Library Anatomy Stage
THdA019c19 CR582048 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA040l10 CR576013 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA040m19 CR573960 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA057h11 CR446352 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
st94o21 DC190098 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA001o10 CR447294 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xthr38P08 CN112609 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
st41f15 DC177041 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7535976 CX477549 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xthr26A18 CN104642 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7719838 CX983741 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
xtbs20L16 CN082316 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TNeu025i02 AL642399 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu024h02 AL643985 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu036k11 AL661470 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7604115 CX395668 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT498 CX359166 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7719838 CX983740 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
rst34l11 DC142978 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst41f15 DC146742 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst94o21 DC160092 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7535976 CX477548 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA057h11 CR446353 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA040m19 CR573961 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA040l10 CR576014 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA030h02 CR579764 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA019c19 CR582049 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
XZT498 CX359165 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7604115 CX395667 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst33l11 DC142701 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
xthr26A18 CN104641 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr38P08 CN112608 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7979694 DR715647 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL220c12 BJ628001 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:7981294 DR718542 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7974690 DR715244 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
xlk115c07ex DC040447 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xl265l18 DC113474 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:7980688 DR727986 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7981294 DR718509 3' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
rxlk115c07ex DC007530 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5