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Summary Expression Phenotypes Gene Literature (57) GO Terms (64) Nucleotides (202) Proteins (55) Interactants (944) Wiki
XB-GENEPAGE-487351

Show:     All X. tropicalis X. laevis

Nucleotide sequences for foxa1 - All

RefSeq mRNAs(4)
Models - Gene (36)
Models - mRNA (37)
mRNAs (8)
ESTs (105)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_204088 NM_204088.1 forkhead box protein A1 1560 bp NP_989419 X. tropicalis
NM_001105271 NM_001105271.1 forkhead box protein A1-A 1734 bp NP_001098741 X. laevis.L
XM_041571854 XM_041571854.1 XP_041427788.1 forkhead box protein A1-A isoform X1 1744 bp XP_041427788 X. laevis.L
NM_001086594 NM_001086594.1 forkhead box protein A1-B 1544 bp NP_001080063 X. laevis.S

Models - Gene (36)

Source Version Model Species
NCBI 10.1 XBXL10_1g37140 X. laevis.S
NCBI 10.1 XBXL10_1g36114 X. laevis.L
NCBI 10.0 XBXT10g004480 X. tropicalis
ENSEMBL 10.0 foxa1 X. tropicalis
Xenbase 9.2 gene13000 X. laevis.S
Xenbase 9.2 gene2352 X. laevis.L
JGI 9.1 Xelaev18039942m.g X. laevis.L
JGI 9.1 Xelaev18041048m.g X. laevis.S
Xenbase 9.1 gene6484 X. tropicalis
ENSEMBL 9.1 foxa1 X. tropicalis
JGI 7.2 Xelaev16035636m.g X. laevis.L
JGI 7.2 Xelaev16025943m.g X. laevis.S
JGI 7.1 Xetro.H01725 X. tropicalis
JGI 6.0 XeXenL6RMv10031544m.g X. laevis.S
JGI 6.0 XeXenL6RMv10041366m.g X. laevis.L
JGI 6.0 XeXenL6RMv10031544m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000025867 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1450014 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_145000022 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000047 X. tropicalis
JGI 4.1 gw1.145.119.1 X. tropicalis
JGI 4.1 gw1.145.120.1 X. tropicalis
JGI 4.1 gw1.145.86.1 X. tropicalis
JGI 4.1 e_gw1.145.119.1 X. tropicalis
JGI 4.1 e_gw1.145.120.1 X. tropicalis
JGI 4.1 e_gw1.145.86.1 X. tropicalis
JGI 4.1 MKH_MKH_estExt_fgenesh1_kg.C_1450014 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1450030 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450085 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450118 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450119 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450045 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450046 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1450022 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_145000014 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000046 X. tropicalis

mRNAs based on gene models(37)

Source Version Model Species
NCBI 10.1 XBmRNA70049 X. laevis.S
NCBI 10.1 XBmRNA68353 X. laevis.L
ENSEMBL 10.0 ENSXETT00000026943 X. tropicalis
NCBI 10.0 mRNA022302 X. tropicalis
Xenbase 9.2 rna37786 X. laevis.S
Xenbase 9.2 rna6844 X. laevis.L
Xenbase 9.1 rna20958 X. tropicalis
JGI 9.1 Xelaev18041048m X. laevis.S
JGI 9.1 Xelaev18039942m X. laevis.L
ENSEMBL 9.1 ENSXETT00000026943 X. tropicalis
JGI 7.2 Xelaev16025943m X. laevis.S
JGI 7.2 Xelaev16035636m X. laevis.L
JGI 7.1 Xetro.H01725.1 X. tropicalis
JGI 7.1 Xetro.H01725.2 X. tropicalis
JGI 6.0 XeXenL6RMv10031544m X. laevis.S
JGI 6.0 XeXenL6RMv10041366m X. laevis.L
JGI 6.0 XeXenL6RMv10031544m X. laevis.L
JGI 4.1 estExt_FilteredModels1.C_1450030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1450022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450046 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1450045 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1450014 X. tropicalis
JGI 4.1 e_gw1.145.86.1 X. tropicalis
JGI 4.1 e_gw1.145.120.1 X. tropicalis
JGI 4.1 e_gw1.145.119.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000026943 X. tropicalis
JGI 4.1 MKH_MKH_estExt_fgenesh1_kg.C_1450014 X. tropicalis
JGI 4.1 gw1.145.86.1 X. tropicalis
JGI 4.1 gw1.145.120.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_145000022 X. tropicalis
JGI 4.1 gw1.145.119.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000047 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_145000046 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_145000014 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450119 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450118 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1450085 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
tNeu062i17 AY157637 X. tropicalis
NM_204088 X. tropicalis
IMAGE:4680765 BC128689 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001105271 X. laevis.L
XM_041571854 X. laevis.L
IMAGE:5572849 BC047130 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
M93658 X. laevis.S
NM_001086594 X. laevis.S

ESTs (105)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TGas133p12 AL957545 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8957708 EL659934 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:7514241 CX743730 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
TGas056m18 AL677983 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas059p03 AL679401 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA035d24 BX722639 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7633568 CX375114 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611125 CX377620 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
foxa1-HAR112 AL681017 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA015d13 CR566301 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7579361 CX418251 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7577999 CX423933 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7576460 CX431932 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7525166 CX442766 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7543559 CX458886 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7523358 CX473133 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:9017049 EL864196 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8964372 EL661539 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:7798583 DN059428 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7742467 DN033927 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
TNeu011d13 AL639606 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu002i09 AL640211 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu050m03 AL662170 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu062i17 AL674192 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu059e23 AL677408 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu074g09 AL779581 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu083c09 AL781509 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu106p14 AL788740 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu125b03 AL795131 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu129g22 AL797814 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7517233 CX748543 5' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:7741692 DN032808 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
st19g16 DC168385 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st22l09 DC169583 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6979808 CF147955 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA029g05 CR419638 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
st92e23 DC189473 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7716422 CX977398 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
THdA015d13 CR566302 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7798583 DN059427 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
rst13m09 DC136638 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7514241 CX743729 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
rst18l16 DC138098 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst22l09 DC139427 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:9017049 EL864197 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
TNeu106p14 BX689684 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7742467 DN033926 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
TTpA035d22 BX722638 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
rst25k14 DC140253 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7633568 CX375113 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu083c09 BX692272 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7611125 CX377619 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu129g22 BX698522 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7716422 CX977397 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
TNeu125b03 BX702138 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7517233 CX748542 3' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
foxa1-HAR112 BX746968 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas056m18 BX747298 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas086l24 BX763617 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7579361 CX418250 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA029g05 CR419639 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7577999 CX423932 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst26p04 DC140626 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7576460 CX431931 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA052f10 CR435862 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
rst77l15 DC155821 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7543559 CX458885 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst92e23 DC159410 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7523358 CX473132 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7741692 DN032807 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
TNeu059e23 BX684258 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu062i17 BX686278 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu074g09 BX688177 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGp998E219552 BX852824 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
xl286p09 DC119438 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk51o19ex DC033067 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk142o04ex DC049432 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk165f20ex DC065819 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk80b11ex DC061307 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL048k02 BJ039153 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:7974384 DR718794 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:7983209 DR722798 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7983637 DR727595 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
17J10 BG354632 5' X. laevis.L Harland stage 19-23 Xenopus laevis cDNA whole organism NF stage 19 to NF stage 23
IMAGE:4203644 BG552986 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4680765 BI445589 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5513904 CF286639 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5572849 BQ734362 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5543595 BQ734375 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998M0412244 BX853700 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL064g10 BJ059958 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL075b14 BJ062129 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL084c06 BJ065784 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL057o11 BJ075550 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxlk128f21ex DC011568 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk165f20ex DC032268 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk142o04ex DC016145 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxl286p09 DC084693 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL197b07 BJ638071 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5