Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (63) GO Terms (23) Nucleotides (205) Proteins (64) Interactants (553) Wiki
XB-GENEPAGE-493856

Show:     All X. tropicalis X. laevis

Nucleotide sequences for prph - All

RefSeq mRNAs(9)
Models - Gene (33)
Models - mRNA (34)
mRNAs (13)
ESTs (97)

RefSeq mRNAs (9)

Accession Version Protein Name Length Protein Species
NM_001001235 NM_001001235.2 peripherin 2254 bp NP_001001235 X. tropicalis
NM_001087060 NM_001087060.1 peripherin 2167 bp NP_001080529 X. laevis.L
XM_018244827 XM_018244827.1 peripherin isoform X1 2245 bp XP_018100316 X. laevis.L
XM_018244828 XM_018244828.1 peripherin isoform X2 2243 bp XP_018100317 X. laevis.L
XM_018244829 XM_018244829.1 peripherin isoform X3 2241 bp XP_018100318 X. laevis.L
NM_001086386 NM_001086386.1 peripherin S homeolog 2201 bp NP_001079855 X. laevis.S
XM_018248023 XM_018248023.2 peripherin S homeolog isoform X1 2234 bp XP_018103512 X. laevis.S
XM_018248024 XM_018248024.2 peripherin S homeolog isoform X2 2234 bp XP_018103513 X. laevis.S
XM_018248025 XM_018248025.2 peripherin S homeolog isoform X3 2231 bp XP_018103514 X. laevis.S

Models - Gene (33)

Source Version Model Species
NCBI 10.1 XBXL10_1g10681 X. laevis.S
NCBI 10.1 XBXL10_1g8015 X. laevis.L
NCBI 10.0 XBXT10g004956 X. tropicalis
ENSEMBL 10.0 prph X. tropicalis
Xenbase 9.2 gene2550 X. laevis.S
Xenbase 9.2 gene8879 X. laevis.L
JGI 9.1 Xelaev18015840m.g X. laevis.S
JGI 9.1 Xelaev18013332m.g X. laevis.L
Xenbase 9.1 gene2957 X. tropicalis
ENSEMBL 9.1 prph X. tropicalis
JGI 8.0 Xetrov14009856m.g X. tropicalis
JGI 7.2 Xelaev16014418m.g X. laevis.L
JGI 7.1 Xetro.B01283 X. tropicalis
JGI 6.0 XeXenL6RMv10045219m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000011188 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1300069 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_130000072 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_130000032 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_130000071 X. tropicalis
JGI 4.1 gw1.130.132.1 X. tropicalis
JGI 4.1 gw1.130.133.1 X. tropicalis
JGI 4.1 gw1.130.134.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1300042 X. tropicalis
JGI 4.1 e_gw1.130.132.1 X. tropicalis
JGI 4.1 e_gw1.130.133.1 X. tropicalis
JGI 4.1 e_gw1.130.134.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300131 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300132 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300133 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1300022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1300070 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1300030 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_130000022 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.1 XBmRNA15154 X. laevis.L
NCBI 10.1 XBmRNA20066 X. laevis.S
NCBI 10.0 mRNA024600 X. tropicalis
ENSEMBL 10.0 ENSXETT00000024447 X. tropicalis
Xenbase 9.2 rna25850 X. laevis.L
Xenbase 9.2 rna7415 X. laevis.S
JGI 9.1 Xelaev18015840m X. laevis.S
Xenbase 9.1 rna9683 X. tropicalis
JGI 9.1 Xelaev18013332m X. laevis.L
ENSEMBL 9.1 ENSXETT00000024447 X. tropicalis
JGI 8.0 Xetrov14009856m X. tropicalis
JGI 7.2 Xelaev16014418m X. laevis.L
JGI 7.1 Xetro.B01283.1 X. tropicalis
JGI 7.1 Xetro.B01283.2 X. tropicalis
JGI 6.0 XeXenL6RMv10045219m X. laevis.L
JGI 4.1 e_gw1.130.132.1 X. tropicalis
JGI 4.1 gw1.130.132.1 X. tropicalis
JGI 4.1 gw1.130.133.1 X. tropicalis
JGI 4.1 gw1.130.134.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_130000032 X. tropicalis
JGI 4.1 e_gw1.130.133.1 X. tropicalis
JGI 4.1 e_gw1.130.134.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000024447 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1300022 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1300069 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1300070 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1300030 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1300042 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300131 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300132 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1300133 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_130000022 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_130000071 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_130000072 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
IMAGE:5335951 BC067967 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
NM_001001235 X. tropicalis
IMAGE:5543232 BC045209 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001087060 X. laevis.L
X16570 X16570 X. laevis.L
XM_018244827 X. laevis.L
XM_018244828 X. laevis.L
XM_018244829 X. laevis.L
IMAGE:4959167 BC056020 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001086386 X. laevis.S
XM_018248023 X. laevis.S
XM_018248024 X. laevis.S
XM_018248025 X. laevis.S

ESTs (97)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA016k22 CR425277 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:9014120 EL860658 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
TTbA054p07 CR438148 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA080k15 CR441291 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7029007 CF782161 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
THdA025o22 CR567148 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7563709 CX473637 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7788093 CX332854 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7791485 CX324809 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA058c06 BX734549 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA052g06 BX733391 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA058c07 BX726896 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA038a14 BX719909 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7550377 CX486049 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7091397 CK653627 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7546729 CX500294 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:9013188 EL858860 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8890946 EL851315 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
xthr33I14 CN109231 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8954067 EL656234 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
IMAGE:7692943 CX919588 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7673474 CX883259 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
xtbs35H10 CN091883 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TNeu020l17 AL635503 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu119n04 AL797238 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu114p13 AL799834 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st97c11 DC192022 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st98c11 DC192267 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8957532 EL656015 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
xtbs05D09 CN074688 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7626851 CX380046 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:9019650 EL868999 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:5335951 BQ521257 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6979110 CF148561 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7609683 CX376158 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xtbs35H10 CN091882 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
rst97c11 DC162043 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst98c11 DC162292 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7091888 CN319630 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7091397 CN323278 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7563709 CX473636 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546729 CX500293 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu114p13 BX689959 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu119n04 BX698233 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5335951 BQ521256 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA016k22 CR425278 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA080k15 CR441292 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA025o22 CR567149 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA052g06 BX733392 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA058c06 BX734550 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7791485 CX324808 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7788093 CX332853 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7626851 CX380045 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609683 DR895137 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xtbs05D09 CN074687 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7673474 CX883258 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7692943 CX919587 3' X. tropicalis NIH_XGC_tropTe4 testis frog
xthr33I14 CN109230 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8890946 EL851316 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8892201 EL852383 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9013188 EL858861 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9014120 EL860659 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:4202560 BG554359 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5542568 BQ735122 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5543232 BQ736884 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998G2412244 BX852966 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998M2410927 BX853375 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5516394 CF286275 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5440338 CF287795 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5543471 BQ733252 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5571337 BQ732757 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4959366 BM180068 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4959167 BM179695 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
AW765299 AW765299 5' X. laevis.L Xenopus laevis tadpole stage 24 whole organism NF stage 24
XL008p16 BJ041589 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL219l12 BJ627881 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:6937095 CD099854 5' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
XL072b01 BJ061131 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL042b01 BJ037954 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL039p16 BJ037273 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
xl309a24 DC125735 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL079h11 BJ064407 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
xl306b24 DC124907 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL083p23 BJ065734 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
xl284e04 DC118698 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl274o12 DC116096 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL088i22 BJ066895 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL219l12 BJ644167 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:4202560 BG161683 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
rxl306b24 DC089977 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL093k22 BJ088656 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxl284e04 DC083984 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL072b01 BJ079328 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL053d23 BJ086495 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:5440338 CF287794 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
rxl274o12 DC081162 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL079h11 BJ082236 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25