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Summary Expression Phenotypes Gene Literature (0) GO Terms (69) Nucleotides (165) Proteins (65) Interactants (11) Wiki
XB-GENEPAGE-5721916

Show:     All X. tropicalis X. laevis

Nucleotide sequences for tcirg1 - All

RefSeq mRNAs(10)
Models - Gene (20)
Models - mRNA (34)
mRNAs (13)
ESTs (47)

RefSeq mRNAs (10)

Accession Version Protein Name Length Protein Species
NM_001016849 NM_001016849.2 V-type proton ATPase 116 kDa subunit a 3 2662 bp NP_001016849 X. tropicalis
XM_012953599 XM_012953599.3 V-type proton ATPase 116 kDa subunit a isoform X1 2748 bp XP_012809053 X. tropicalis
XM_031905097 XM_031905097.1 XP_031760957.1 V-type proton ATPase 116 kDa subunit a isoform X2 2684 bp XP_031760957 X. tropicalis
XM_031905098 XM_031905098.1 XP_031760958.1 V-type proton ATPase 116 kDa subunit a isoform X3 2570 bp XP_031760958 X. tropicalis
XM_031905099 XM_031905099.1 XP_031760959.1 V-type proton ATPase 116 kDa subunit a isoform X4 2485 bp XP_031760959 X. tropicalis
XM_031905100 XM_031905100.1 XP_031760960.1 V-type proton ATPase 116 kDa subunit a isoform X5 2671 bp XP_031760960 X. tropicalis
XM_018225582 XM_018225582.2 V-type proton ATPase 116 kDa subunit a3 2792 bp XP_018081071 X. laevis.L
XM_018225583 XM_018225583.2 V-type proton ATPase 116 kDa subunit a3 2792 bp XP_018081072 X. laevis.L
XM_018225584 XM_018225584.2 V-type proton ATPase 116 kDa subunit a3 2786 bp XP_018081073 X. laevis.L
XM_018225585 XM_018225585.2 V-type proton ATPase 116 kDa subunit a3 2902 bp XP_018081074 X. laevis.L

Models - Gene (20)

Source Version Model Species
NCBI 10.1 XBXL10_1g30843 X. laevis.L
NCBI 10.0 XBXT10g013771 X. tropicalis
ENSEMBL 10.0 tcirg1 X. tropicalis
Xenbase 9.2 gene43955 X. laevis.L
JGI 9.1 Xelaev18035113m.g X. laevis.L
Xenbase 9.1 gene16079 X. tropicalis
ENSEMBL 9.1 tcirg1 X. tropicalis
JGI 7.1 Xetro.K01002 X. tropicalis
JGI 6.0 XeXenL6RMv10051440m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000015766 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_800000005 X. tropicalis
JGI 4.1 e_gw1.800.1.1 X. tropicalis
JGI 4.1 e_gw1.800.15.1 X. tropicalis
JGI 4.1 e_gw1.800.39.1 X. tropicalis
JGI 4.1 gw1.800.1.1 X. tropicalis
JGI 4.1 gw1.800.15.1 X. tropicalis
JGI 4.1 gw1.800.39.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_800000002 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_800000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_800000006 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.1 XBmRNA58221 X. laevis.L
ENSEMBL 10.0 ENSXETT00000034397 X. tropicalis
ENSEMBL 10.0 ENSXETT00000079483 X. tropicalis
NCBI 10.0 mRNA068112 X. tropicalis
ENSEMBL 10.0 ENSXETT00000085142 X. tropicalis
ENSEMBL 10.0 ENSXETT00000099704 X. tropicalis
ENSEMBL 10.0 ENSXETT00000103466 X. tropicalis
Xenbase 9.2 rna87618 X. laevis.L
ENSEMBL 9.1 ENSXETT00000034397 X. tropicalis
JGI 9.1 Xelaev18035113m X. laevis.L
ENSEMBL 9.1 ENSXETT00000103466 X. tropicalis
ENSEMBL 9.1 ENSXETT00000099704 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095689 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094886 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085142 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085067 X. tropicalis
ENSEMBL 9.1 ENSXETT00000083760 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079483 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074213 X. tropicalis
Xenbase 9.1 rna35528 X. tropicalis
JGI 7.1 Xetro.K01002.2 X. tropicalis
JGI 7.1 Xetro.K01002.1 X. tropicalis
JGI 6.0 XeXenL6RMv10051440m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_800000005 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_800000002 X. tropicalis
JGI 4.1 e_gw1.800.39.1 X. tropicalis
JGI 4.1 e_gw1.800.15.1 X. tropicalis
JGI 4.1 e_gw1.800.1.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000034397 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_800000001 X. tropicalis
JGI 4.1 gw1.800.15.1 X. tropicalis
JGI 4.1 gw1.800.1.1 X. tropicalis
JGI 4.1 gw1.800.39.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_800000006 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
IMAGE:7000249 BC090359 X. tropicalis NICHD_XGC_Swb1 whole organism frog
TNeu034b02 CR855432 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001016849 X. tropicalis
XM_012953599 X. tropicalis
XM_031905097 X. tropicalis
XM_031905098 X. tropicalis
XM_031905099 X. tropicalis
XM_031905100 X. tropicalis
IMAGE:7012129 BC080836 X. laevis.L
XM_018225582 X. laevis.L
XM_018225583 X. laevis.L
XM_018225584 X. laevis.L
XM_018225585 X. laevis.L

ESTs (47)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7000249 CF343030 5' X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:8953813 EL654938 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
IMAGE:8938707 EL641789 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:7673344 CX882697 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:6991066 CF216792 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7714099 CX973117 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:6991066 CF216793 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7714182 CX973359 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
TGas051m24 AL676018 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7853109 DT393955 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:8950377 EG652982 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
TGas103g23 AL964776 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas106j10 AL967983 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8869021 EL709315 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8919335 EL833271 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8918556 EL832569 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8934676 EL636377 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8953043 EG656217 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
TNeu034b02 AL657354 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu064h07 AL783505 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8927263 EL674061 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8925237 EL670990 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
xtbs29E05 CN087726 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:8919335 EL833272 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
TGas051m24 BX746450 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas106j10 BX754282 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas103g23 BX754483 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu064h07 BX687153 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xtbs29E05 CN087725 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7000249 CF343031 3' X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:7673344 CX882696 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7714099 CX973116 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7714182 CX973358 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7853109 DT393954 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:8934676 EL636376 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8925237 EL670989 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8927263 EL674060 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8918556 EL832570 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8869021 EL709314 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
XL512b05ex BP704487 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998D208085 BX854740 5' X. laevis.L Soares NXEG egg unfertilized egg stage
IMAGE:8641063 EB733336 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:3300835 BE131873 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:8536972 EB483274 5' X. laevis.L NICHD_XGC_olfb brain unspecified stage
IMAGE:3300835 BE490931 3' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL512b05ex BP737293 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:8641063 EB737830 3' X. laevis.L NICHD_XGC_skin_m skin unspecified stage